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This page was generated on 2022-10-18 14:50:13 -0400 (Tue, 18 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for optimalFlowData on nebbiolo1


To the developers/maintainers of the optimalFlowData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 265/410HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.8.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2022-10-18 07:30:03 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: RELEASE_3_15
git_last_commit: 46b9e00
git_last_commit_date: 2022-04-26 13:34:12 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: optimalFlowData
Version: 1.8.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings optimalFlowData_1.8.0.tar.gz
StartedAt: 2022-10-18 11:35:12 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 11:35:53 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 41.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings optimalFlowData_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.1Mb
  sub-directories of 1Mb or more:
    data  100.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 100.8 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0290.0080.037
Cytometry100.0190.0120.030
Cytometry110.0240.0080.031
Cytometry120.0280.0040.031
Cytometry130.0270.0110.039
Cytometry140.0330.0160.050
Cytometry150.0180.0000.018
Cytometry160.0150.0030.018
Cytometry170.0690.0090.076
Cytometry180.0370.0240.061
Cytometry190.0310.0000.031
Cytometry20.0620.0040.066
Cytometry200.0460.0070.053
Cytometry210.0630.0050.067
Cytometry220.0210.0070.029
Cytometry230.0250.0000.025
Cytometry240.0240.0040.027
Cytometry250.0210.0040.025
Cytometry260.0230.0030.026
Cytometry270.0740.0040.078
Cytometry280.0620.0190.082
Cytometry290.0660.0160.083
Cytometry30.0090.0070.016
Cytometry300.0560.0160.072
Cytometry310.0510.0070.060
Cytometry320.0660.0000.067
Cytometry330.0330.0030.037
Cytometry340.0970.0080.106
Cytometry350.0450.0070.052
Cytometry360.0160.0010.016
Cytometry370.0140.0000.014
Cytometry380.0110.0040.014
Cytometry390.0140.0000.014
Cytometry40.0170.0000.017
Cytometry400.0330.0040.037
Cytometry50.0130.0030.016
Cytometry60.0150.0010.015
Cytometry70.0110.0040.015
Cytometry80.0100.0070.017
Cytometry90.0240.0040.027
buildDatabase0.4550.0490.503
cytometry.diagnosis0.0000.0020.001
noise.types0.0000.0010.002