Back to Build/check report for BioC 3.15 experimental data
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2022-10-18 14:50:14 -0400 (Tue, 18 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for SomaticCancerAlterations on nebbiolo1


To the developers/maintainers of the SomaticCancerAlterations package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 360/410HostnameOS / ArchINSTALLBUILDCHECK
SomaticCancerAlterations 1.32.0  (landing page)
Julian Gehring
Snapshot Date: 2022-10-18 07:30:03 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/SomaticCancerAlterations
git_branch: RELEASE_3_15
git_last_commit: 61519ef
git_last_commit_date: 2022-04-26 13:11:49 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SomaticCancerAlterations
Version: 1.32.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SomaticCancerAlterations
StartedAt: 2022-10-18 10:40:50 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 10:41:13 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 23.1 seconds
RetCode: 0
Status:   OK  
PackageFile: SomaticCancerAlterations_1.32.0.tar.gz
PackageFileSize: 4.442 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SomaticCancerAlterations
###
##############################################################################
##############################################################################


* checking for file ‘SomaticCancerAlterations/DESCRIPTION’ ... OK
* preparing ‘SomaticCancerAlterations’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in
  serialize/load version 3 cannot be read in older versions of R.
  File(s) containing such objects:
    ‘SomaticCancerAlterations/data/gbm_tcga.rda’
    ‘SomaticCancerAlterations/data/hnsc_tcga.rda’
    ‘SomaticCancerAlterations/data/kirc_tcga.rda’
    ‘SomaticCancerAlterations/data/luad_tcga.rda’
    ‘SomaticCancerAlterations/data/lusc_tcga.rda’
    ‘SomaticCancerAlterations/data/ov_tcga.rda’
    ‘SomaticCancerAlterations/data/skcm_tcga.rda’
    ‘SomaticCancerAlterations/data/thca_tcga.rda’
* building ‘SomaticCancerAlterations_1.32.0.tar.gz’