Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:23:03 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the graper package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 841/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
graper 1.12.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: graper |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.12.0.tar.gz |
StartedAt: 2022-10-19 03:10:27 -0400 (Wed, 19 Oct 2022) |
EndedAt: 2022-10-19 03:12:12 -0400 (Wed, 19 Oct 2022) |
EllapsedTime: 105.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: graper.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/graper.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘graper/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘graper’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘graper’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.15-bioc/meat/graper.Rcheck/00check.log’ for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘graper’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(graper) > > test_check("graper") iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-866.676 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-572.828 ELB improved by 293.848 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-515.318 ELB improved by 57.5107 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-477.92 ELB improved by 37.3978 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-460.449 ELB improved by 17.4712 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-453.009 ELB improved by 7.44024 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-448.701 ELB improved by 4.30773 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-445.328 ELB improved by 3.3733 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-442.136 ELB improved by 3.19141 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.865 ELB improved by 3.27155 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-435.478 ELB improved by 3.38666 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-432.096 ELB improved by 3.38203 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.953 ELB improved by 3.14296 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.289 ELB improved by 2.66431 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.212 ELB improved by 2.07661 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.671 ELB improved by 1.54116 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-421.536 ELB improved by 1.13444 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.69 ELB improved by 0.846391 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.049 ELB improved by 0.640575 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.559 ELB improved by 0.490583 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.177 ELB improved by 0.381875 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.873 ELB improved by 0.304161 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.624 ELB improved by 0.248434 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.417 ELB improved by 0.207499 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.241 ELB improved by 0.176386 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.089 ELB improved by 0.151956 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.956 ELB improved by 0.132261 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.84 ELB improved by 0.116069 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.738 ELB improved by 0.102556 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.647 ELB improved by 0.0911483 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.565 ELB improved by 0.0814285 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.492 ELB improved by 0.0730817 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.426 ELB improved by 0.0658652 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.367 ELB improved by 0.0595886 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.312 ELB improved by 0.0541001 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.263 ELB improved by 0.0492774 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.218 ELB improved by 0.0450207 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.177 ELB improved by 0.0412482 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.139 ELB improved by 0.0378921 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.104 ELB improved by 0.034896 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.072 ELB improved by 0.0322125 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.042 ELB improved by 0.0298015 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.014 ELB improved by 0.0276292 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.989 ELB improved by 0.0256667 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.965 ELB improved by 0.0238892 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.943 ELB improved by 0.0222755 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.922 ELB improved by 0.020807 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.902 ELB improved by 0.0194679 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.884 ELB improved by 0.0182442 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.867 ELB improved by 0.0171238 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.851 ELB improved by 0.0160961 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.836 ELB improved by 0.0151516 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.821 ELB improved by 0.0142823 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.808 ELB improved by 0.0134806 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.795 ELB improved by 0.0127402 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.783 ELB improved by 0.0120554 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.772 ELB improved by 0.011421 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.761 ELB improved by 0.0108324 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.751 ELB improved by 0.0102856 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.741 ELB improved by 0.00977685 ELB converged iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-891.61 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-618.826 ELB improved by 272.784 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-554.678 ELB improved by 64.1481 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-504.689 ELB improved by 49.9892 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-481.16 ELB improved by 23.5283 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-472.035 ELB improved by 9.12513 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-466.234 ELB improved by 5.80142 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-460.816 ELB improved by 5.41778 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-455.236 ELB improved by 5.57988 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-449.468 ELB improved by 5.76822 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-443.815 ELB improved by 5.65322 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.815 ELB improved by 4.99986 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-434.881 ELB improved by 3.93404 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-432.04 ELB improved by 2.84056 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-430.043 ELB improved by 1.99722 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.598 ELB improved by 1.44481 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.495 ELB improved by 1.1027 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.616 ELB improved by 0.879252 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-425.899 ELB improved by 0.716942 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-425.308 ELB improved by 0.591181 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.814 ELB improved by 0.49387 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.392 ELB improved by 0.421963 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.021 ELB improved by 0.3711 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-423.685 ELB improved by 0.335559 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-423.375 ELB improved by 0.310375 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-423.083 ELB improved by 0.292026 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.805 ELB improved by 0.278129 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.538 ELB improved by 0.267035 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.28 ELB improved by 0.25758 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.031 ELB improved by 0.248956 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-421.791 ELB improved by 0.24064 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-421.558 ELB improved by 0.232354 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-421.334 ELB improved by 0.224008 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-421.119 ELB improved by 0.215651 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.911 ELB improved by 0.207398 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.712 ELB improved by 0.199376 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.52 ELB improved by 0.191673 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.336 ELB improved by 0.184314 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.159 ELB improved by 0.177258 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.988 ELB improved by 0.170423 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.825 ELB improved by 0.163718 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.668 ELB improved by 0.157057 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.517 ELB improved by 0.150369 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.374 ELB improved by 0.143595 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.237 ELB improved by 0.136676 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.107 ELB improved by 0.129562 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.985 ELB improved by 0.122214 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.87 ELB improved by 0.114614 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.764 ELB improved by 0.106777 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.665 ELB improved by 0.0987507 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.574 ELB improved by 0.0906193 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.492 ELB improved by 0.0824931 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.417 ELB improved by 0.0744987 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.351 ELB improved by 0.0667645 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.291 ELB improved by 0.059408 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.239 ELB improved by 0.0525255 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.192 ELB improved by 0.046186 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.152 ELB improved by 0.0404293 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.117 ELB improved by 0.0352684 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.086 ELB improved by 0.0306931 iteration 61 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.059 ELB improved by 0.0266761 iteration 62 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.036 ELB improved by 0.023178 iteration 63 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.016 ELB improved by 0.0201528 iteration 64 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.999 ELB improved by 0.0175513 iteration 65 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.983 ELB improved by 0.0153244 iteration 66 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.97 ELB improved by 0.0134249 iteration 67 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.958 ELB improved by 0.0118089 iteration 68 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.948 ELB improved by 0.0104368 iteration 69 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.938 ELB improved by 0.00927295 ELB converged iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-866.67 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-589.851 ELB improved by 276.819 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-533.307 ELB improved by 56.5442 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-492.264 ELB improved by 41.0428 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-472.51 ELB improved by 19.7539 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-465.353 ELB improved by 7.1567 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-461.884 ELB improved by 3.46956 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-459.352 ELB improved by 2.53236 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-457.101 ELB improved by 2.25065 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-454.954 ELB improved by 2.14647 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-452.875 ELB improved by 2.07941 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-450.886 ELB improved by 1.98867 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-449.041 ELB improved by 1.84514 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-447.396 ELB improved by 1.64483 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-445.988 ELB improved by 1.40815 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-444.819 ELB improved by 1.1694 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-443.86 ELB improved by 0.958377 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-443.073 ELB improved by 0.787329 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-442.423 ELB improved by 0.650292 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-441.889 ELB improved by 0.533512 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-441.459 ELB improved by 0.429853 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-441.117 ELB improved by 0.342248 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-440.843 ELB improved by 0.274273 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-440.618 ELB improved by 0.224469 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-440.43 ELB improved by 0.188522 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-440.268 ELB improved by 0.162211 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-440.125 ELB improved by 0.14243 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.998 ELB improved by 0.127128 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.883 ELB improved by 0.114996 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.778 ELB improved by 0.105195 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.681 ELB improved by 0.0971787 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.59 ELB improved by 0.0905771 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.505 ELB improved by 0.0851313 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.424 ELB improved by 0.0806541 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.347 ELB improved by 0.0770062 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.273 ELB improved by 0.0740823 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.202 ELB improved by 0.0718014 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.131 ELB improved by 0.0701017 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.062 ELB improved by 0.0689359 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.994 ELB improved by 0.0682689 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.926 ELB improved by 0.0680756 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.858 ELB improved by 0.0683395 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.789 ELB improved by 0.069052 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.719 ELB improved by 0.0702113 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.647 ELB improved by 0.0718229 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.573 ELB improved by 0.0738985 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.496 ELB improved by 0.0764571 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.417 ELB improved by 0.0795253 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.334 ELB improved by 0.0831377 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.246 ELB improved by 0.0873384 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.154 ELB improved by 0.0921826 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.056 ELB improved by 0.0977383 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.952 ELB improved by 0.104089 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.841 ELB improved by 0.111336 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.721 ELB improved by 0.119605 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.592 ELB improved by 0.129047 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.453 ELB improved by 0.139849 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.3 ELB improved by 0.152243 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.134 ELB improved by 0.16652 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-436.951 ELB improved by 0.183061 iteration 61 Updating parameters of variational distributions... Calculating ELB.. ELB=-436.748 ELB improved by 0.202378 iteration 62 Updating parameters of variational distributions... Calculating ELB.. ELB=-436.523 ELB improved by 0.2252 iteration 63 Updating parameters of variational distributions... Calculating ELB.. ELB=-436.27 ELB improved by 0.25264 iteration 64 Updating parameters of variational distributions... Calculating ELB.. ELB=-435.984 ELB improved by 0.286509 iteration 65 Updating parameters of variational distributions... Calculating ELB.. ELB=-435.654 ELB improved by 0.329869 iteration 66 Updating parameters of variational distributions... Calculating ELB.. ELB=-435.266 ELB improved by 0.387818 iteration 67 Updating parameters of variational distributions... Calculating ELB.. ELB=-434.799 ELB improved by 0.467767 iteration 68 Updating parameters of variational distributions... Calculating ELB.. ELB=-434.222 ELB improved by 0.57644 iteration 69 Updating parameters of variational distributions... Calculating ELB.. ELB=-433.513 ELB improved by 0.709101 iteration 70 Updating parameters of variational distributions... Calculating ELB.. ELB=-432.681 ELB improved by 0.832302 iteration 71 Updating parameters of variational distributions... Calculating ELB.. ELB=-431.796 ELB improved by 0.884857 iteration 72 Updating parameters of variational distributions... Calculating ELB.. ELB=-430.96 ELB improved by 0.835746 iteration 73 Updating parameters of variational distributions... Calculating ELB.. ELB=-430.238 ELB improved by 0.722354 iteration 74 Updating parameters of variational distributions... Calculating ELB.. ELB=-429.642 ELB improved by 0.595307 iteration 75 Updating parameters of variational distributions... Calculating ELB.. ELB=-429.161 ELB improved by 0.481407 iteration 76 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.772 ELB improved by 0.388917 iteration 77 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.455 ELB improved by 0.31683 iteration 78 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.194 ELB improved by 0.260766 iteration 79 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.978 ELB improved by 0.216255 iteration 80 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.798 ELB improved by 0.180067 iteration 81 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.648 ELB improved by 0.150274 iteration 82 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.522 ELB improved by 0.12575 iteration 83 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.416 ELB improved by 0.105678 iteration 84 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.327 ELB improved by 0.0893232 iteration 85 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.251 ELB improved by 0.0760003 iteration 86 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.186 ELB improved by 0.0651052 iteration 87 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.13 ELB improved by 0.0561371 iteration 88 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.081 ELB improved by 0.0486979 iteration 89 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.039 ELB improved by 0.0424783 iteration 90 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.001 ELB improved by 0.0372399 iteration 91 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.969 ELB improved by 0.0327984 iteration 92 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.94 ELB improved by 0.0290104 iteration 93 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.914 ELB improved by 0.0257625 iteration 94 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.891 ELB improved by 0.0229648 iteration 95 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.87 ELB improved by 0.0205445 iteration 96 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.852 ELB improved by 0.0184426 iteration 97 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.835 ELB improved by 0.0166106 iteration 98 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.82 ELB improved by 0.0150085 iteration 99 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.807 ELB improved by 0.0136031 iteration 100 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.794 ELB improved by 0.0123665 iteration 101 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.783 ELB improved by 0.0112754 iteration 102 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.773 ELB improved by 0.0103101 iteration 103 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.763 ELB improved by 0.00945383 ELB converged iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-893.067 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-576.678 ELB improved by 316.389 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-516.832 ELB improved by 59.8462 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-477.872 ELB improved by 38.9594 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-460.393 ELB improved by 17.4786 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-451.073 ELB improved by 9.32055 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-443.707 ELB improved by 7.36562 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-435.89 ELB improved by 7.81738 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.951 ELB improved by 8.93858 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.848 ELB improved by 9.10337 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.508 ELB improved by 7.33981 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-405.755 ELB improved by 4.75316 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.89 ELB improved by 2.8654 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.034 ELB improved by 1.85601 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-399.696 ELB improved by 1.33732 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-398.641 ELB improved by 1.05509 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-397.749 ELB improved by 0.89235 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-396.956 ELB improved by 0.792896 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-396.226 ELB improved by 0.729463 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-395.54 ELB improved by 0.686329 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-394.893 ELB improved by 0.647078 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-394.295 ELB improved by 0.598405 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-393.748 ELB improved by 0.54686 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-393.238 ELB improved by 0.50995 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-392.74 ELB improved by 0.498299 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-392.225 ELB improved by 0.514796 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-391.682 ELB improved by 0.542399 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-391.146 ELB improved by 0.536224 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-390.659 ELB improved by 0.486876 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-390.225 ELB improved by 0.434474 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-389.826 ELB improved by 0.398352 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-389.45 ELB improved by 0.37651 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-389.082 ELB improved by 0.367822 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-388.702 ELB improved by 0.380028 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-388.264 ELB improved by 0.43768 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-387.688 ELB improved by 0.576814 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-386.982 ELB improved by 0.705899 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-386.376 ELB improved by 0.605296 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-385.946 ELB improved by 0.430652 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-385.628 ELB improved by 0.317748 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-385.38 ELB improved by 0.247651 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-385.179 ELB improved by 0.201523 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-385.008 ELB improved by 0.170522 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.86 ELB improved by 0.148528 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.729 ELB improved by 0.130662 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.615 ELB improved by 0.114389 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.514 ELB improved by 0.100186 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.424 ELB improved by 0.0901539 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.338 ELB improved by 0.0862731 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.248 ELB improved by 0.0901523 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.145 ELB improved by 0.103263 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.02 ELB improved by 0.124919 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.875 ELB improved by 0.144607 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.737 ELB improved by 0.138155 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.638 ELB improved by 0.0985349 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.583 ELB improved by 0.0556283 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.553 ELB improved by 0.0301899 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.534 ELB improved by 0.0187527 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.52 ELB improved by 0.0137986 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.509 ELB improved by 0.0113586 iteration 61 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.499 ELB improved by 0.00989903 ELB converged [ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ] > > proc.time() user system elapsed 4.808 0.293 5.085
graper.Rcheck/graper-Ex.timings
name | user | system | elapsed | |
coef.graper | 0.075 | 0.014 | 0.090 | |
getPIPs | 0.068 | 0.011 | 0.079 | |
graper | 0.116 | 0.016 | 0.132 | |
makeExampleData | 0.019 | 0.002 | 0.021 | |
makeExampleDataWithUnequalGroups | 0.018 | 0.001 | 0.020 | |
plotELBO | 0.363 | 0.022 | 0.385 | |
plotGroupPenalties | 1.227 | 0.014 | 1.243 | |
plotPosterior | 1.303 | 0.075 | 1.380 | |
predict.graper | 2.919 | 0.065 | 2.988 | |
print.graper | 0.072 | 0.012 | 0.084 | |