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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SpacePAC
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* checking for file ‘SpacePAC/DESCRIPTION’ ... OK
* preparing ‘SpacePAC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SpacePAC.Rnw’ using Sweave
Loading required package: iPAC
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: ‘gdata’
The following object is masked from ‘package:stats’:
nobs
The following object is masked from ‘package:utils’:
object.size
The following object is masked from ‘package:base’:
startsWith
Loading required package: scatterplot3d
Loading required package: Biostrings
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following object is masked from ‘package:gdata’:
combine
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:gdata’:
first, first<-
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Loading required package: IRanges
Attaching package: ‘IRanges’
The following object is masked from ‘package:gdata’:
trim
Loading required package: XVector
Loading required package: GenomeInfoDb
Attaching package: ‘Biostrings’
The following object is masked from ‘package:base’:
strsplit
Loading required package: multtest
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Warning in file(con, "r") :
URL 'https://files.rcsb.org/view/2ENQ.cif': status was 'Couldn't resolve host name'
Error: processing vignette 'SpacePAC.Rnw' failed with diagnostics:
chunk 1 (label = Example1)
Error in file(con, "r") :
cannot open the connection to 'https://files.rcsb.org/view/2ENQ.cif'
--- failed re-building ‘SpacePAC.Rnw’
SUMMARY: processing the following file failed:
‘SpacePAC.Rnw’
Error: Vignette re-building failed.
Execution halted
