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This page was generated on 2022-04-13 14:50:23 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for geneLenDataBase on nebbiolo2


To the developers/maintainers of the geneLenDataBase package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 140/408HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.30.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2022-04-13 07:30:01 -0400 (Wed, 13 Apr 2022)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: RELEASE_3_14
git_last_commit: b3cc755
git_last_commit_date: 2021-10-26 11:45:27 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: geneLenDataBase
Version: 1.30.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings geneLenDataBase_1.30.0.tar.gz
StartedAt: 2022-04-13 11:26:41 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 11:33:45 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 423.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings geneLenDataBase_1.30.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0520.0120.064
anoCar1.genscan.LENGTH0.0360.0000.037
anoCar1.xenoRefGene.LENGTH0.6240.0160.640
anoGam1.ensGene.LENGTH0.0490.0040.053
anoGam1.geneid.LENGTH0.0390.0000.039
anoGam1.genscan.LENGTH0.0310.0040.035
apiMel1.genscan.LENGTH0.0310.0000.031
apiMel2.ensGene.LENGTH0.0740.0000.074
apiMel2.geneid.LENGTH0.0750.0200.095
apiMel2.genscan.LENGTH0.0230.0000.023
aplCal1.xenoRefGene.LENGTH0.3210.0000.321
bosTau2.geneSymbol.LENGTH0.0310.0000.031
bosTau2.geneid.LENGTH0.1760.0040.180
bosTau2.genscan.LENGTH0.0740.0000.074
bosTau2.refGene.LENGTH0.0320.0000.033
bosTau2.sgpGene.LENGTH0.0830.0000.083
bosTau3.ensGene.LENGTH0.0840.0000.084
bosTau3.geneSymbol.LENGTH0.030.000.03
bosTau3.geneid.LENGTH0.0980.0000.098
bosTau3.genscan.LENGTH0.0560.0040.060
bosTau3.refGene.LENGTH0.0270.0000.027
bosTau3.sgpGene.LENGTH0.0710.0000.071
bosTau4.ensGene.LENGTH0.0770.0000.077
bosTau4.geneSymbol.LENGTH0.0270.0000.027
bosTau4.genscan.LENGTH0.1370.0120.148
bosTau4.nscanGene.LENGTH0.0220.0000.022
bosTau4.refGene.LENGTH0.0250.0000.025
braFlo1.xenoRefGene.LENGTH0.2850.0000.285
caeJap1.xenoRefGene.LENGTH0.2580.0000.258
caePb1.xenoRefGene.LENGTH0.3470.0000.348
caePb2.xenoRefGene.LENGTH0.3210.0040.325
caeRem2.xenoRefGene.LENGTH0.3060.0000.306
caeRem3.xenoRefGene.LENGTH0.2650.0000.265
calJac1.genscan.LENGTH0.0630.0040.068
calJac1.nscanGene.LENGTH0.0810.0000.081
calJac1.xenoRefGene.LENGTH1.200.081.28
canFam1.ensGene.LENGTH0.0860.0000.087
canFam1.geneSymbol.LENGTH0.0050.0000.005
canFam1.genscan.LENGTH0.0520.0000.052
canFam1.nscanGene.LENGTH0.0490.0040.054
canFam1.refGene.LENGTH0.0050.0000.005
canFam1.xenoRefGene.LENGTH0.4520.0000.452
canFam2.ensGene.LENGTH0.0730.0000.074
canFam2.geneSymbol.LENGTH0.0010.0040.005
canFam2.genscan.LENGTH0.0450.0000.045
canFam2.nscanGene.LENGTH0.0450.0040.049
canFam2.refGene.LENGTH0.0040.0000.004
canFam2.xenoRefGene.LENGTH0.4330.0120.444
cavPor3.ensGene.LENGTH0.0720.0000.072
cavPor3.genscan.LENGTH0.0780.0000.078
cavPor3.nscanGene.LENGTH0.0530.0000.053
cavPor3.xenoRefGene.LENGTH0.4700.0000.469
cb1.xenoRefGene.LENGTH0.3490.0000.348
cb3.xenoRefGene.LENGTH0.2730.0080.281
ce2.geneSymbol.LENGTH0.0540.0040.057
ce2.geneid.LENGTH0.0530.0000.053
ce2.refGene.LENGTH0.0570.0000.057
ce4.geneSymbol.LENGTH0.0540.0000.055
ce4.refGene.LENGTH0.0480.0000.049
ce4.xenoRefGene.LENGTH0.0690.0000.069
ce6.ensGene.LENGTH0.0780.0000.078
ce6.geneSymbol.LENGTH0.0580.0000.057
ce6.refGene.LENGTH0.0510.0000.051
ce6.xenoRefGene.LENGTH0.0710.0000.071
ci1.geneSymbol.LENGTH0.0040.0000.004
ci1.refGene.LENGTH0.0040.0000.004
ci1.xenoRefGene.LENGTH0.1440.0000.144
ci2.ensGene.LENGTH0.0570.0000.057
ci2.geneSymbol.LENGTH0.0040.0000.005
ci2.refGene.LENGTH0.0040.0000.004
ci2.xenoRefGene.LENGTH0.2420.0120.254
danRer3.ensGene.LENGTH0.0990.0000.099
danRer3.geneSymbol.LENGTH0.0470.0040.051
danRer3.refGene.LENGTH0.0440.0040.048
danRer4.ensGene.LENGTH0.2150.0040.219
danRer4.geneSymbol.LENGTH0.0460.0000.047
danRer4.genscan.LENGTH0.0510.0000.051
danRer4.nscanGene.LENGTH0.0820.0000.082
danRer4.refGene.LENGTH0.0430.0000.043
danRer5.ensGene.LENGTH0.1950.0040.199
danRer5.geneSymbol.LENGTH0.0430.0000.044
danRer5.refGene.LENGTH0.040.000.04
danRer5.vegaGene.LENGTH0.0430.0000.043
danRer5.vegaPseudoGene.LENGTH0.0020.0000.002
danRer6.ensGene.LENGTH0.0940.0030.096
danRer6.geneSymbol.LENGTH0.0440.0000.044
danRer6.refGene.LENGTH0.040.000.04
danRer6.xenoRefGene.LENGTH0.4230.0040.427
dm1.geneSymbol.LENGTH0.0560.0000.056
dm1.genscan.LENGTH0.0220.0000.023
dm1.refGene.LENGTH0.0520.0000.052
dm2.geneSymbol.LENGTH0.0550.0000.055
dm2.geneid.LENGTH0.0320.0000.032
dm2.genscan.LENGTH0.0210.0000.021
dm2.nscanGene.LENGTH0.0480.0000.048
dm2.refGene.LENGTH0.050.000.05
dm3.geneSymbol.LENGTH0.0610.0000.061
dm3.nscanPasaGene.LENGTH0.0460.0000.046
dm3.refGene.LENGTH0.0530.0040.057
dp2.genscan.LENGTH0.0240.0040.029
dp2.xenoRefGene.LENGTH0.170.000.17
dp3.geneid.LENGTH0.0340.0000.034
dp3.genscan.LENGTH0.0220.0000.022
dp3.xenoRefGene.LENGTH0.0920.0010.092
droAna1.geneid.LENGTH0.0560.0030.059
droAna1.genscan.LENGTH0.0180.0000.018
droAna1.xenoRefGene.LENGTH0.1580.0000.158
droAna2.genscan.LENGTH0.0400.0000.041
droAna2.xenoRefGene.LENGTH0.2060.0000.206
droEre1.genscan.LENGTH0.0900.0040.094
droEre1.xenoRefGene.LENGTH0.2180.0000.218
droGri1.genscan.LENGTH0.0340.0000.034
droGri1.xenoRefGene.LENGTH0.2270.0000.227
droMoj1.geneid.LENGTH0.1070.0000.107
droMoj1.genscan.LENGTH0.0450.0000.044
droMoj1.xenoRefGene.LENGTH0.1610.0040.164
droMoj2.genscan.LENGTH0.0250.0040.029
droMoj2.xenoRefGene.LENGTH0.2070.0000.207
droPer1.genscan.LENGTH0.0310.0000.031
droPer1.xenoRefGene.LENGTH0.2140.0000.214
droSec1.genscan.LENGTH0.0240.0000.024
droSec1.xenoRefGene.LENGTH0.2180.0000.218
droSim1.geneid.LENGTH0.0310.0000.031
droSim1.genscan.LENGTH0.0190.0000.020
droSim1.xenoRefGene.LENGTH0.1670.0040.171
droVir1.geneid.LENGTH0.0850.0000.085
droVir1.genscan.LENGTH0.2620.0200.282
droVir1.xenoRefGene.LENGTH0.1910.0040.195
droVir2.genscan.LENGTH0.0290.0000.029
droVir2.xenoRefGene.LENGTH0.2030.0000.204
droYak1.geneid.LENGTH0.0360.0000.037
droYak1.genscan.LENGTH0.0240.0000.024
droYak1.xenoRefGene.LENGTH0.1720.0000.172
droYak2.genscan.LENGTH0.0210.0010.022
droYak2.xenoRefGene.LENGTH0.1990.0030.202
equCab1.geneSymbol.LENGTH0.0040.0000.004
equCab1.geneid.LENGTH0.0690.0000.070
equCab1.nscanGene.LENGTH0.0340.0000.033
equCab1.refGene.LENGTH0.0040.0000.004
equCab1.sgpGene.LENGTH0.0580.0000.058
equCab2.ensGene.LENGTH0.0780.0000.078
equCab2.geneSymbol.LENGTH0.0020.0040.006
equCab2.nscanGene.LENGTH0.0410.0000.041
equCab2.refGene.LENGTH0.0050.0000.006
equCab2.xenoRefGene.LENGTH0.4630.0040.466
felCat3.ensGene.LENGTH0.0750.0120.087
felCat3.geneSymbol.LENGTH0.0030.0000.003
felCat3.geneid.LENGTH0.5980.0000.598
felCat3.genscan.LENGTH0.0970.0000.098
felCat3.nscanGene.LENGTH0.0730.0040.077
felCat3.refGene.LENGTH0.0030.0000.003
felCat3.sgpGene.LENGTH0.1170.0000.117
felCat3.xenoRefGene.LENGTH0.8700.0040.874
fr1.ensGene.LENGTH0.0640.0040.068
fr1.genscan.LENGTH0.2910.0120.303
fr2.ensGene.LENGTH0.1140.0040.118
galGal2.ensGene.LENGTH0.0490.0000.049
galGal2.geneSymbol.LENGTH0.0140.0000.014
galGal2.geneid.LENGTH0.0340.0000.034
galGal2.genscan.LENGTH0.0460.0000.046
galGal2.refGene.LENGTH0.0130.0000.013
galGal2.sgpGene.LENGTH0.0390.0000.039
galGal3.ensGene.LENGTH0.0630.0000.063
galGal3.geneSymbol.LENGTH0.0120.0000.012
galGal3.genscan.LENGTH0.0420.0000.043
galGal3.nscanGene.LENGTH0.0570.0040.061
galGal3.refGene.LENGTH0.0130.0000.013
galGal3.xenoRefGene.LENGTH0.3930.0000.393
gasAcu1.ensGene.LENGTH0.0780.0000.077
gasAcu1.nscanGene.LENGTH0.0820.0040.086
hg16.acembly.LENGTH1.2280.1201.348
hg16.ensGene.LENGTH0.0550.0000.056
hg16.exoniphy.LENGTH0.1730.0000.174
hg16.geneSymbol.LENGTH0.0780.0000.079
hg16.geneid.LENGTH0.0380.0000.038
hg16.genscan.LENGTH0.0460.0000.045
hg16.knownGene.LENGTH0.0870.0000.087
hg16.refGene.LENGTH0.0710.0000.070
hg16.sgpGene.LENGTH0.0440.0000.044
hg17.acembly.LENGTH0.3270.0000.327
hg17.acescan.LENGTH0.0050.0040.009
hg17.ccdsGene.LENGTH0.0210.0000.020
hg17.ensGene.LENGTH0.0890.0000.089
hg17.exoniphy.LENGTH0.3470.0000.346
hg17.geneSymbol.LENGTH0.0790.0000.078
hg17.geneid.LENGTH0.0590.0000.059
hg17.genscan.LENGTH0.0490.0000.048
hg17.knownGene.LENGTH0.0870.0000.086
hg17.refGene.LENGTH0.0760.0000.075
hg17.sgpGene.LENGTH0.0580.0000.057
hg17.vegaGene.LENGTH0.0340.0000.034
hg17.vegaPseudoGene.LENGTH0.0140.0000.014
hg17.xenoRefGene.LENGTH0.1620.0080.170
hg18.acembly.LENGTH0.3850.0000.385
hg18.acescan.LENGTH0.0080.0000.009
hg18.ccdsGene.LENGTH0.0280.0000.028
hg18.ensGene.LENGTH0.160.000.16
hg18.exoniphy.LENGTH0.3530.0000.353
hg18.geneSymbol.LENGTH0.0750.0040.079
hg18.geneid.LENGTH0.0580.0000.059
hg18.genscan.LENGTH0.0490.0000.049
hg18.knownGene.LENGTH0.1180.0050.123
hg18.knownGeneOld3.LENGTH0.0500.0070.058
hg18.refGene.LENGTH0.0780.0000.079
hg18.sgpGene.LENGTH0.0640.0000.065
hg18.sibGene.LENGTH0.3490.0040.353
hg18.xenoRefGene.LENGTH0.2570.0000.256
hg19.ccdsGene.LENGTH0.030.000.03
hg19.ensGene.LENGTH0.2350.0070.241
hg19.exoniphy.LENGTH0.3330.0000.333
hg19.geneSymbol.LENGTH0.0790.0000.078
hg19.knownGene.LENGTH0.1370.0000.137
hg19.nscanGene.LENGTH0.1180.0040.122
hg19.refGene.LENGTH0.0790.0000.078
hg19.xenoRefGene.LENGTH0.2820.0000.282
loxAfr3.xenoRefGene.LENGTH0.5570.0080.565
mm7.ensGene.LENGTH0.0840.0040.088
mm7.geneSymbol.LENGTH0.0770.0000.077
mm7.geneid.LENGTH0.0670.0000.066
mm7.genscan.LENGTH0.0470.0040.051
mm7.knownGene.LENGTH0.0740.0000.073
mm7.refGene.LENGTH0.0610.0040.065
mm7.sgpGene.LENGTH0.0610.0000.061
mm7.xenoRefGene.LENGTH0.2330.0000.233
mm8.ccdsGene.LENGTH0.0180.0000.017
mm8.ensGene.LENGTH0.0620.0000.062
mm8.geneSymbol.LENGTH0.070.000.07
mm8.geneid.LENGTH0.0470.0080.055
mm8.genscan.LENGTH0.0450.0000.045
mm8.knownGene.LENGTH0.0730.0000.073
mm8.nscanGene.LENGTH0.0530.0000.053
mm8.refGene.LENGTH0.0680.0000.068
mm8.sgpGene.LENGTH0.0570.0000.057
mm8.sibGene.LENGTH0.4350.0160.451
mm8.xenoRefGene.LENGTH0.2710.0000.271
mm9.acembly.LENGTH0.2510.0000.251
mm9.ccdsGene.LENGTH0.0240.0000.023
mm9.ensGene.LENGTH0.1140.0000.114
mm9.exoniphy.LENGTH0.330.000.33
mm9.geneSymbol.LENGTH0.0710.0000.070
mm9.geneid.LENGTH0.0660.0000.067
mm9.genscan.LENGTH0.0520.0000.052
mm9.knownGene.LENGTH0.0830.0040.087
mm9.nscanGene.LENGTH0.0490.0000.050
mm9.refGene.LENGTH0.0660.0000.066
mm9.sgpGene.LENGTH0.0660.0000.066
mm9.xenoRefGene.LENGTH0.2720.0040.276
monDom1.genscan.LENGTH0.0520.0000.053
monDom4.ensGene.LENGTH0.0530.0080.061
monDom4.geneSymbol.LENGTH0.0000.0030.003
monDom4.genscan.LENGTH0.0420.0010.043
monDom4.nscanGene.LENGTH0.0420.0000.043
monDom4.refGene.LENGTH0.0030.0000.003
monDom4.xenoRefGene.LENGTH0.6150.0040.619
monDom5.ensGene.LENGTH0.0790.0000.079
monDom5.geneSymbol.LENGTH0.0030.0000.002
monDom5.genscan.LENGTH0.0420.0000.042
monDom5.nscanGene.LENGTH0.0820.0000.082
monDom5.refGene.LENGTH0.0030.0000.003
monDom5.xenoRefGene.LENGTH0.4220.0000.422
ornAna1.ensGene.LENGTH0.0760.0000.077
ornAna1.geneSymbol.LENGTH0.0020.0000.002
ornAna1.refGene.LENGTH0.0020.0000.001
ornAna1.xenoRefGene.LENGTH0.4140.0040.417
oryLat2.ensGene.LENGTH0.0630.0000.062
oryLat2.geneSymbol.LENGTH0.0040.0000.003
oryLat2.refGene.LENGTH0.0030.0000.003
oryLat2.xenoRefGene.LENGTH0.3770.0000.378
panTro1.ensGene.LENGTH0.0750.0040.080
panTro1.geneid.LENGTH0.0380.0000.039
panTro1.genscan.LENGTH0.0450.0000.046
panTro1.xenoRefGene.LENGTH0.090.000.09
panTro2.ensGene.LENGTH0.0930.0000.094
panTro2.geneSymbol.LENGTH0.0810.0040.085
panTro2.genscan.LENGTH0.050.000.05
panTro2.nscanGene.LENGTH0.0510.0000.051
panTro2.refGene.LENGTH0.0830.0000.083
panTro2.xenoRefGene.LENGTH0.4000.0080.409
petMar1.xenoRefGene.LENGTH0.2060.0080.213
ponAbe2.ensGene.LENGTH0.0650.0000.065
ponAbe2.geneSymbol.LENGTH0.010.000.01
ponAbe2.genscan.LENGTH0.0430.0050.048
ponAbe2.nscanGene.LENGTH0.0450.0030.047
ponAbe2.refGene.LENGTH0.0090.0000.009
ponAbe2.xenoRefGene.LENGTH0.4920.0080.500
priPac1.xenoRefGene.LENGTH0.2930.0000.293
rheMac2.ensGene.LENGTH0.110.000.11
rheMac2.geneSymbol.LENGTH0.0050.0000.005
rheMac2.geneid.LENGTH0.0600.0010.061
rheMac2.nscanGene.LENGTH0.0480.0030.050
rheMac2.refGene.LENGTH0.0040.0000.005
rheMac2.sgpGene.LENGTH0.0540.0000.055
rheMac2.xenoRefGene.LENGTH0.3690.0000.369
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rn3.geneSymbol.LENGTH0.0430.0000.042
rn3.geneid.LENGTH0.0430.0000.042
rn3.genscan.LENGTH0.0550.0000.056
rn3.knownGene.LENGTH0.020.000.02
rn3.nscanGene.LENGTH0.0520.0000.052
rn3.refGene.LENGTH0.0420.0000.042
rn3.sgpGene.LENGTH0.0460.0000.047
rn3.xenoRefGene.LENGTH0.4140.0000.414
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rn4.geneSymbol.LENGTH0.0370.0040.042
rn4.geneid.LENGTH0.0660.0000.067
rn4.genscan.LENGTH0.0440.0040.048
rn4.knownGene.LENGTH0.0150.0040.020
rn4.nscanGene.LENGTH0.0380.0040.042
rn4.refGene.LENGTH0.0390.0000.039
rn4.sgpGene.LENGTH0.0620.0000.062
rn4.xenoRefGene.LENGTH0.2440.0000.244
sacCer1.ensGene.LENGTH0.0140.0000.015
sacCer2.ensGene.LENGTH0.0130.0000.014
strPur1.geneSymbol.LENGTH0.0020.0000.004
strPur1.genscan.LENGTH0.0470.0030.049
strPur1.refGene.LENGTH0.0040.0000.003
strPur1.xenoRefGene.LENGTH0.3390.0000.339
strPur2.geneSymbol.LENGTH0.0030.0000.003
strPur2.genscan.LENGTH0.0860.0000.086
strPur2.refGene.LENGTH0.0030.0000.003
strPur2.xenoRefGene.LENGTH0.4740.0040.478
supportedGeneIDs0.0960.0164.437
supportedGenomes0.1440.0121.590
taeGut1.ensGene.LENGTH0.050.000.05
taeGut1.geneSymbol.LENGTH0.0020.0000.002
taeGut1.genscan.LENGTH0.0290.0000.029
taeGut1.nscanGene.LENGTH0.0200.0000.019
taeGut1.refGene.LENGTH0.0020.0000.002
taeGut1.xenoRefGene.LENGTH0.450.020.47
tetNig1.ensGene.LENGTH0.0660.0160.082
tetNig1.geneid.LENGTH0.0520.0000.052
tetNig1.genscan.LENGTH0.0360.0040.040
tetNig1.nscanGene.LENGTH0.0520.0040.055
tetNig2.ensGene.LENGTH0.0570.0000.056
unfactor0.0030.0000.003
xenTro1.genscan.LENGTH0.0650.0040.069
xenTro2.ensGene.LENGTH0.0670.0000.067
xenTro2.geneSymbol.LENGTH0.0250.0000.025
xenTro2.genscan.LENGTH0.0530.0000.054
xenTro2.refGene.LENGTH0.0200.0040.024