Back to Build/check report for BioC 3.14 annotations
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This page was generated on 2022-01-19 06:00:08 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for chromhmmData on nebbiolo2


To the developers/maintainers of the chromhmmData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 10/33HostnameOS / ArchINSTALLBUILDCHECK
chromhmmData 0.99.2  (landing page)
Mahmoud Ahmed
Snapshot Date: 2022-01-19 02:30:01 -0500 (Wed, 19 Jan 2022)
git_url: https://git.bioconductor.org/packages/chromhmmData
git_branch: master
git_last_commit: 8df27c4
git_last_commit_date: 2021-06-08 22:06:02 -0500 (Tue, 08 Jun 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: chromhmmData
Version: 0.99.2
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:chromhmmData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings chromhmmData_0.99.2.tar.gz
StartedAt: 2022-01-19 03:02:22 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 03:02:29 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 7.7 seconds
RetCode: 0
Status:   OK  
CheckDir: chromhmmData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:chromhmmData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings chromhmmData_0.99.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-annotation/meat/chromhmmData.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘chromhmmData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘chromhmmData’ version ‘0.99.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘chromhmmData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.7Mb
  sub-directories of 1Mb or more:
    extdata  12.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-annotation/meat/chromhmmData.Rcheck/00check.log’
for details.



Installation output

chromhmmData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL chromhmmData
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘chromhmmData’ ...
** using staged installation
** inst
** help
No man pages found in package  ‘chromhmmData’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (chromhmmData)

Tests output


Example timings