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This page was generated on 2021-10-16 15:58:43 -0400 (Sat, 16 Oct 2021).

CHECK results for SingleCellMultiModal on malbec2

To the developers/maintainers of the SingleCellMultiModal package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 353/406HostnameOS / ArchINSTALLBUILDCHECK
SingleCellMultiModal 1.4.1  (landing page)
Marcel Ramos
Snapshot Date: 2021-10-16 09:30:07 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/SingleCellMultiModal
git_branch: RELEASE_3_13
git_last_commit: 5879cb8
git_last_commit_date: 2021-06-03 17:06:55 -0400 (Thu, 03 Jun 2021)
malbec2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SingleCellMultiModal
Version: 1.4.1
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:SingleCellMultiModal.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings SingleCellMultiModal_1.4.1.tar.gz
StartedAt: 2021-10-16 14:02:22 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 14:06:16 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 234.1 seconds
RetCode: 0
Status:   OK  
CheckDir: SingleCellMultiModal.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:SingleCellMultiModal.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings SingleCellMultiModal_1.4.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/SingleCellMultiModal.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SingleCellMultiModal/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SingleCellMultiModal’ version ‘1.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SingleCellMultiModal’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘BiocGenerics:::replaceSlots’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
CITEseq              13.529  0.620  15.621
SingleCellMultiModal  8.725  0.096  11.171
scNMT                 6.438  0.041   8.185
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/SingleCellMultiModal.Rcheck/00check.log’
for details.



Installation output

SingleCellMultiModal.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL SingleCellMultiModal
###
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘SingleCellMultiModal’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SingleCellMultiModal)

Tests output


Example timings

SingleCellMultiModal.Rcheck/SingleCellMultiModal-Ex.timings

nameusersystemelapsed
CITEseq13.529 0.62015.621
GTseq2.0210.0402.861
SCoPE23.1360.0763.843
SingleCellMultiModal-package0.0140.0000.031
SingleCellMultiModal 8.725 0.09611.171
scMultiome3.8150.0354.978
scNMT6.4380.0418.185
scmmCache0.0010.0000.010
seqFISH3.1780.0644.170