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This page was generated on 2021-10-15 15:06:27 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for zlibbioc on tokay2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/zlibbioc.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 2041/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
zlibbioc 1.38.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/zlibbioc
git_branch: RELEASE_3_13
git_last_commit: b80b55e
git_last_commit_date: 2021-05-19 11:48:46 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: zlibbioc
Version: 1.38.0
Command: rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.38.0.tar.gz
StartedAt: 2021-10-15 12:27:31 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 12:28:39 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 67.8 seconds
RetCode: 0
Status:   OK  
PackageFile: zlibbioc_1.38.0.zip
PackageFileSize: 357.5 KiB

Command output

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###
### Running command:
###
###   rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.38.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'zlibbioc' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include" "C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386"
make -C zlib-1.2.5 -f"C:/Users/BIOCBU~1/BBS-3~1.13-/R/etc/i386/Makeconf" -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory '/c/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmpgxh1a1/R.INSTALL58ec143742d6/zlibbioc/src/zlib-1.2.5'
win32/Makefile.gcc:90: warning: overriding recipe for target '.c.o'
C:/Users/BIOCBU~1/BBS-3~1.13-/R/etc/i386/Makeconf:238: warning: ignoring old recipe for target '.c.o'
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
"C:/rtools40/mingw32/bin/"gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
"C:/rtools40/mingw32/bin/"ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
"C:/rtools40/mingw32/bin/"windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc
"C:/rtools40/mingw32/bin/"gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
"C:/rtools40/mingw32/bin/"strip zlib1bioc.dll
make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmpgxh1a1/R.INSTALL58ec143742d6/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
            "C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include"
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c R_init_zlibbioc.c -o R_init_zlibbioc.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'zlibbioc'
    finding HTML links ... done
    pkgconfig                               html  
    zlibbioc-package                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'zlibbioc' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
make -C zlib-1.2.5 -f"C:/Users/BIOCBU~1/BBS-3~1.13-/R/etc/x64/Makeconf" -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory '/c/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpygHMan/R.INSTALLb78079cd7bae/zlibbioc/src/zlib-1.2.5'
win32/Makefile.gcc:90: warning: overriding recipe for target '.c.o'
C:/Users/BIOCBU~1/BBS-3~1.13-/R/etc/x64/Makeconf:238: warning: ignoring old recipe for target '.c.o'
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
"C:/rtools40/mingw64/bin/"gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
"C:/rtools40/mingw64/bin/"ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
"C:/rtools40/mingw64/bin/"windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc
"C:/rtools40/mingw64/bin/"gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
"C:/rtools40/mingw64/bin/"strip zlib1bioc.dll
make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpygHMan/R.INSTALLb78079cd7bae/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
            "C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c R_init_zlibbioc.c -o R_init_zlibbioc.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zlibbioc' as zlibbioc_1.38.0.zip
* DONE (zlibbioc)