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This page was generated on 2021-10-15 15:06:24 -0400 (Fri, 15 Oct 2021).

CHECK results for supraHex on tokay2

To the developers/maintainers of the supraHex package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1872/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.30.0  (landing page)
Hai Fang
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/supraHex
git_branch: RELEASE_3_13
git_last_commit: 67ac896
git_last_commit_date: 2021-05-19 12:00:14 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: supraHex
Version: 1.30.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:supraHex.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings supraHex_1.30.0.tar.gz
StartedAt: 2021-10-15 06:20:28 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 06:22:26 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 118.3 seconds
RetCode: 0
Status:   OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:supraHex.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings supraHex_1.30.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/supraHex.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'supraHex/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'supraHex' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'supraHex' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/supraHex_1.30.0.tar.gz && rm -rf supraHex.buildbin-libdir && mkdir supraHex.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=supraHex.buildbin-libdir supraHex_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL supraHex_1.30.0.zip && rm supraHex_1.30.0.tar.gz supraHex_1.30.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3 2937k    3 94285    0     0   456k      0  0:00:06 --:--:--  0:00:06  455k
 91 2937k   91 2699k    0     0  2229k      0  0:00:01  0:00:01 --:--:-- 2229k
100 2937k  100 2937k    0     0  2335k      0  0:00:01  0:00:01 --:--:-- 2335k

install for i386

* installing *source* package 'supraHex' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'supraHex'
    finding HTML links ... done
    Fang                                    html  
    Golub                                   html  
    Xiang                                   html  
    sBMH                                    html  
    sCompReorder                            html  
    sDistance                               html  
    sDmat                                   html  
    sDmatCluster                            html  
    sDmatMinima                             html  
    sHexDist                                html  
    sHexGrid                                html  
    sHexGridVariant                         html  
    sHexPolygon                             html  
    sInitial                                html  
    sMapOverlay                             html  
    sNeighAny                               html  
    sNeighDirect                            html  
    sPipeline                               html  
    sTopology                               html  
    sTrainBatch                             html  
    sTrainSeq                               html  
    sTrainology                             html  
    sWriteData                              html  
    visColoralpha                           html  
    visColorbar                             html  
    visColormap                             html  
    visCompReorder                          html  
    visDmatCluster                          html  
    visDmatHeatmap                          html  
    visHeatmap                              html  
    visHeatmapAdv                           html  
    visHexAnimate                           html  
    visHexBarplot                           html  
    visHexComp                              html  
    visHexGrid                              html  
    visHexMapping                           html  
    visHexMulComp                           html  
    visHexPattern                           html  
    visKernels                              html  
    visTreeBSclust                          html  
    visTreeBootstrap                        html  
    visVp                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'supraHex' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'supraHex' as supraHex_1.30.0.zip
* DONE (supraHex)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'supraHex' successfully unpacked and MD5 sums checked

Tests output


Example timings

supraHex.Rcheck/examples_i386/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.050.020.07
sCompReorder3.520.013.53
sDistance0.360.000.36
sDmat0.360.000.36
sDmatCluster0.630.000.63
sDmatMinima0.50.00.5
sHexDist000
sHexGrid0.010.000.01
sHexGridVariant000
sHexPolygon0.110.000.11
sInitial000
sMapOverlay0.450.000.46
sNeighAny0.020.000.01
sNeighDirect0.020.000.02
sPipeline000
sTopology0.060.000.06
sTrainBatch0.050.000.05
sTrainSeq0.350.000.36
sTrainology000
sWriteData0.830.000.82
visColoralpha000
visColorbar0.030.000.03
visColormap0.020.000.02
visCompReorder3.780.103.88
visDmatCluster000
visDmatHeatmap000
visHeatmap0.090.000.09
visHeatmapAdv0.360.010.37
visHexAnimate0.020.000.02
visHexBarplot0.920.020.94
visHexComp0.310.000.31
visHexGrid0.330.000.33
visHexMapping1.550.061.61
visHexMulComp1.170.061.23
visHexPattern2.190.172.36
visKernels0.010.020.03
visTreeBSclust000
visTreeBootstrap000
visVp0.040.010.05

supraHex.Rcheck/examples_x64/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.070.000.07
sCompReorder2.540.002.54
sDistance0.320.000.31
sDmat0.320.000.33
sDmatCluster0.450.010.47
sDmatMinima0.610.000.61
sHexDist000
sHexGrid000
sHexGridVariant0.000.020.01
sHexPolygon0.130.000.13
sInitial000
sMapOverlay0.490.020.50
sNeighAny000
sNeighDirect0.010.000.02
sPipeline000
sTopology0.030.030.06
sTrainBatch0.070.000.06
sTrainSeq0.370.000.38
sTrainology000
sWriteData0.690.060.72
visColoralpha000
visColorbar0.020.000.01
visColormap000
visCompReorder3.420.023.44
visDmatCluster000
visDmatHeatmap000
visHeatmap0.090.000.09
visHeatmapAdv0.360.010.38
visHexAnimate000
visHexBarplot0.940.030.97
visHexComp0.340.000.34
visHexGrid0.360.000.36
visHexMapping1.690.081.77
visHexMulComp1.260.061.32
visHexPattern2.160.212.36
visKernels0.030.010.05
visTreeBSclust000
visTreeBootstrap000
visVp0.030.020.05