Back to Multiple platform build/check report for BioC 3.13
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2021-10-15 15:05:53 -0400 (Fri, 15 Oct 2021).

CHECK results for sights on nebbiolo1

To the developers/maintainers of the sights package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sights.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1760/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sights 1.18.0  (landing page)
Elika Garg
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/sights
git_branch: RELEASE_3_13
git_last_commit: f914a9b
git_last_commit_date: 2021-05-19 12:21:05 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: sights
Version: 1.18.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:sights.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings sights_1.18.0.tar.gz
StartedAt: 2021-10-14 11:37:36 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 11:38:54 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 77.8 seconds
RetCode: 0
Status:   OK  
CheckDir: sights.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:sights.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings sights_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/sights.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sights/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sights’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sights’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

sights.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL sights
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘sights’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sights)

Tests output

sights.Rcheck/tests/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(sights)
> test_check("sights") 
alpha= 2.527861 beta= 2.054019 
alpha= 2.162155 beta= 2.810248 
alpha= 2.162155 beta= 2.810248 
alpha= 2.162155 beta= 2.810248 
[ FAIL 0 | WARN 13 | SKIP 0 | PASS 65 ]
> 
> proc.time()
   user  system elapsed 
 37.151   0.428  37.584 

Example timings

sights.Rcheck/sights-Ex.timings

nameusersystemelapsed
ex_dataMatrix0.0160.0050.020
inglese0.0390.0070.047
normLoess0.1760.0040.179
normMedFil0.0670.0030.071
normR0.0240.0040.028
normRobZ0.0030.0000.002
normSPAWN0.0330.0000.033
normSights0.0020.0000.003
normZ0.0020.0000.002
plot3d0.6080.0000.608
plotAutoco1.8410.0271.868
plotBox0.4970.0000.496
plotHeatmap1.0360.0041.040
plotHist0.2340.0030.238
plotIGFit0.1680.0010.168
plotScatter1.8680.0601.928
plotSights1.0320.0001.032
statFDR0.0280.0000.029
statRVM0.0100.0040.014
statSights0.0140.0000.014
statT0.0210.0000.021