Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:18 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the regutools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/regutools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1552/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
regutools 1.4.0 (landing page) Joselyn Chavez
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: regutools |
Version: 1.4.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings regutools_1.4.0.tar.gz |
StartedAt: 2021-10-15 04:20:51 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 04:37:26 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 995.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: regutools.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings regutools_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/regutools.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'regutools/DESCRIPTION' ... OK * this is package 'regutools' version '1.4.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'regutools' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_dna_objects 12.11 0.35 12.85 build_condition 9.22 1.08 11.17 convert_to_granges 9.11 0.39 9.88 convert_to_biostrings 8.51 0.89 16.40 get_dna_objects 8.30 0.65 9.70 get_gene_synonyms 7.86 0.70 8.96 connect_database 7.28 1.08 8.77 guess_id 7.89 0.37 8.64 get_regulatory_summary 7.91 0.33 8.59 get_dataset 7.93 0.29 8.59 list_datasets 7.68 0.34 8.37 get_regulatory_network 7.38 0.61 9.59 regulondb 7.01 0.87 8.26 get_binding_sites 7.43 0.32 8.86 list_attributes 7.45 0.30 8.11 get_gene_regulators 6.73 0.77 8.11 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_dna_objects 12.39 0.25 13.01 build_condition 8.35 0.64 9.61 connect_database 8.43 0.36 9.22 get_dna_objects 7.82 0.46 8.61 convert_to_granges 7.79 0.45 8.59 get_regulatory_network 7.59 0.42 9.64 convert_to_biostrings 7.59 0.39 8.38 get_regulatory_summary 7.47 0.41 8.24 get_dataset 7.51 0.29 8.19 list_attributes 7.37 0.33 8.08 get_binding_sites 7.09 0.42 7.88 get_gene_regulators 7.11 0.39 7.89 list_datasets 6.94 0.28 7.58 regulondb 6.99 0.22 7.55 guess_id 6.77 0.40 7.51 get_gene_synonyms 6.73 0.35 7.40 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
regutools.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/regutools_1.4.0.tar.gz && rm -rf regutools.buildbin-libdir && mkdir regutools.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=regutools.buildbin-libdir regutools_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL regutools_1.4.0.zip && rm regutools_1.4.0.tar.gz regutools_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 494k 100 494k 0 0 1588k 0 --:--:-- --:--:-- --:--:-- 1596k install for i386 * installing *source* package 'regutools' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'regutools' finding HTML links ... done build_condition html connect_database html convert_to_biostrings html convert_to_granges html existing_intervals html existing_partial_match html get_binding_sites html get_dataset html get_dna_objects html get_gene_regulators html get_gene_synonyms html get_regulatory_network html get_regulatory_summary html guess_id html list_attributes html list_datasets html non_existing_intervals html plot_dna_objects html regulondb-class html regulondb-methods html regulondb html regulondb_result-class html regutools-package html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'regutools' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'regutools' as regutools_1.4.0.zip * DONE (regutools) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'regutools' successfully unpacked and MD5 sums checked
regutools.Rcheck/tests_i386/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("regutools") > > test_check("regutools") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ] Warning message: call dbDisconnect() when finished working with a connection > > proc.time() user system elapsed 144.62 9.00 163.64 |
regutools.Rcheck/tests_x64/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("regutools") > > test_check("regutools") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ] Warning message: call dbDisconnect() when finished working with a connection > > proc.time() user system elapsed 133.20 6.90 147.29 |
regutools.Rcheck/examples_i386/regutools-Ex.timings
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regutools.Rcheck/examples_x64/regutools-Ex.timings
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