Back to Multiple platform build/check report for BioC 3.13
ABCDEFGHIJKLM[N]OPQRSTUVWXYZ

This page was generated on 2021-10-15 15:06:45 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for nuCpos on machv2

To the developers/maintainers of the nuCpos package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nuCpos.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1286/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nuCpos 1.10.0  (landing page)
Hiroaki Kato
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/nuCpos
git_branch: RELEASE_3_13
git_last_commit: 64a4e71
git_last_commit_date: 2021-05-19 12:37:20 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: nuCpos
Version: 1.10.0
Command: rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh nuCpos_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R nuCpos.buildbin-libdir
StartedAt: 2021-10-15 03:19:36 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 03:20:41 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 65.1 seconds
RetCode: 0
Status:   OK  
PackageFile: nuCpos_1.10.0.tgz
PackageFileSize: 1.233 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh nuCpos_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R nuCpos.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=nuCpos.buildbin-libdir nuCpos_1.10.0.tar.gz'
>>>>>>> 

* installing *source* package ‘nuCpos’ ...
** using staged installation
** libs
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  HBA_3.f90 -o HBA_3.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_nuCpos.c -o R_init_nuCpos.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  localHBA_3.f90 -o localHBA_3.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  nuCpos2_1.f90 -o nuCpos2_1.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  nuCpos2_2.f90 -o nuCpos2_2.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  nuCpos_1.f90 -o nuCpos_1.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  nuCpos_2.f90 -o nuCpos_2.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o nuCpos.so HBA_3.o R_init_nuCpos.o localHBA_3.o nuCpos2_1.o nuCpos2_2.o nuCpos_1.o nuCpos_2.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/nuCpos.buildbin-libdir/00LOCK-nuCpos/00new/nuCpos/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nuCpos)


>>>>>>> 
>>>>>>> FIXING LINKS FOR nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"