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This page was generated on 2021-10-15 15:06:14 -0400 (Fri, 15 Oct 2021).

CHECK results for netprioR on tokay2

To the developers/maintainers of the netprioR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/netprioR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1266/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
netprioR 1.18.0  (landing page)
Fabian Schmich
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/netprioR
git_branch: RELEASE_3_13
git_last_commit: a54190f
git_last_commit_date: 2021-05-19 12:20:48 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: netprioR
Version: 1.18.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:netprioR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings netprioR_1.18.0.tar.gz
StartedAt: 2021-10-15 02:42:30 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 02:44:12 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 101.3 seconds
RetCode: 0
Status:   OK  
CheckDir: netprioR.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:netprioR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings netprioR_1.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/netprioR.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'netprioR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'netprioR' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'netprioR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
fit-methods 5.83   0.42    6.25
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
fit-methods 6.17   0.56    6.74
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

netprioR.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/netprioR_1.18.0.tar.gz && rm -rf netprioR.buildbin-libdir && mkdir netprioR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netprioR.buildbin-libdir netprioR_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL netprioR_1.18.0.zip && rm netprioR_1.18.0.tar.gz netprioR_1.18.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 91065  100 91065    0     0   469k      0 --:--:-- --:--:-- --:--:--  470k

install for i386

* installing *source* package 'netprioR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'netprioR'
    finding HTML links ... done
    ROC-methods                             html  
    bandwidth                               html  
    cmn                                     html  
    conjugate_gradient                      html  
    cuthill_mckee                           html  
    fit-methods                             html  
    laplacian                               html  
    learn                                   html  
    netprioR-class                          html  
    netprioR-package                        html  
    norm_kern                               html  
    plot.netprioR                           html  
    ranks-methods                           html  
    simulate_labels                         html  
    simulate_network_random                 html  
    simulate_network_scalefree              html  
    simulate_phenotype                      html  
    simulation                              html  
    weights-methods                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'netprioR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'netprioR' as netprioR_1.18.0.zip
* DONE (netprioR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'netprioR' successfully unpacked and MD5 sums checked

Tests output


Example timings

netprioR.Rcheck/examples_i386/netprioR-Ex.timings

nameusersystemelapsed
ROC-methods0.010.020.03
fit-methods5.830.426.25
netprioR-class000
plot.netprioR0.510.010.54
ranks-methods0.100.000.09
simulate_labels000
simulate_network_random0.090.000.09
simulate_network_scalefree0.110.000.11
simulate_phenotype000
weights-methods0.030.000.03

netprioR.Rcheck/examples_x64/netprioR-Ex.timings

nameusersystemelapsed
ROC-methods0.020.000.01
fit-methods6.170.566.74
netprioR-class000
plot.netprioR0.530.000.53
ranks-methods0.110.000.11
simulate_labels000
simulate_network_random0.080.020.09
simulate_network_scalefree0.110.000.11
simulate_phenotype000
weights-methods0.030.000.03