| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:13 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the nanotatoR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nanotatoR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1248/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nanotatoR 1.8.0 (landing page) Surajit Bhattacharya
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: nanotatoR |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/nanotatoR_1.8.0.tar.gz && rm -rf nanotatoR.buildbin-libdir && mkdir nanotatoR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nanotatoR.buildbin-libdir nanotatoR_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL nanotatoR_1.8.0.zip && rm nanotatoR_1.8.0.tar.gz nanotatoR_1.8.0.zip |
| StartedAt: 2021-10-14 10:13:22 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:14:21 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 58.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/nanotatoR_1.8.0.tar.gz && rm -rf nanotatoR.buildbin-libdir && mkdir nanotatoR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nanotatoR.buildbin-libdir nanotatoR_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL nanotatoR_1.8.0.zip && rm nanotatoR_1.8.0.tar.gz nanotatoR_1.8.0.zip
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install for i386
* installing *source* package 'nanotatoR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'nanotatoR'
finding HTML links ... done
DGV_extraction html
Decipher_extraction html
buildrunBNBedFiles html
clinvar_gene html
cohortFrequency html
compSmapbed html
gene_extraction html
gene_list_generation html
gtr_gene html
internalFrequency html
makeMergedSVData html
makeMergedSmapData html
nanotatoR html
nanotatoR_main html
nonOverlapGenes html
omim_gene html
overlapGenes html
readBNBedFiles html
readSMap html
run_bionano_filter html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'nanotatoR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nanotatoR' as nanotatoR_1.8.0.zip
* DONE (nanotatoR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'nanotatoR' successfully unpacked and MD5 sums checked