Leo Lahti
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/microbiome |
| git_branch: RELEASE_3_13 |
| git_last_commit: bd8313a |
| git_last_commit_date: 2021-05-19 12:29:45 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:11 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the microbiome package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/microbiome.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1127/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| microbiome 1.14.0 (landing page) Leo Lahti
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: microbiome |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/microbiome_1.14.0.tar.gz && rm -rf microbiome.buildbin-libdir && mkdir microbiome.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiome.buildbin-libdir microbiome_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL microbiome_1.14.0.zip && rm microbiome_1.14.0.tar.gz microbiome_1.14.0.zip |
| StartedAt: 2021-10-14 09:30:34 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:31:24 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 49.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/microbiome_1.14.0.tar.gz && rm -rf microbiome.buildbin-libdir && mkdir microbiome.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiome.buildbin-libdir microbiome_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL microbiome_1.14.0.zip && rm microbiome_1.14.0.tar.gz microbiome_1.14.0.zip
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install for i386
* installing *source* package 'microbiome' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'microbiome'
finding HTML links ... done
abundances html
finding level-2 HTML links ... done
aggregate_rare html
aggregate_taxa html
aggregate_top_taxa html
alpha html
associate html
atlas1006 html
baseline html
bfratio html
bimodality html
bimodality_sarle html
boxplot_abundance html
chunk_reorder html
cmat2table html
collapse_replicates html
core html
core_abundance html
core_heatmap html
core_matrix html
core_members html
coverage html
default_colors html
densityplot html
dietswap html
divergence html
diversities html
diversity html
dominance html
dominant html
estimate_stability html
evenness html
find_optima html
gktau html
global html
group_age html
group_bmi html
heat html
hitchip.taxonomy html
hotplot html
inequality html
intermediate_stability html
is_compositional html
log_modulo_skewness html
low_abundance html
map_levels html
merge_taxa2 html
meta html
microbiome-package html
multimodality html
neat html
neatsort html
overlap html
peerj32 html
plot_atlas html
plot_composition html
plot_core html
plot_density html
plot_frequencies html
plot_landscape html
plot_regression html
plot_taxa_prevalence html
plot_tipping html
potential_analysis html
potential_univariate html
prevalence html
quiet html
radial_theta html
rare html
rare_abundance html
rare_members html
rarity html
read_biom2phyloseq html
read_csv2phyloseq html
read_mothur2phyloseq html
read_phyloseq html
readcount html
remove_samples html
remove_taxa html
richness html
spreadplot html
summarize_phyloseq html
taxa html
time_normalize html
time_sort html
timesplit html
top html
top_taxa html
transform html
write_phyloseq html
ztransform html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'microbiome' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microbiome' as microbiome_1.14.0.zip
* DONE (microbiome)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'microbiome' successfully unpacked and MD5 sums checked