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This page was generated on 2021-10-15 15:06:42 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for mgsa on machv2

To the developers/maintainers of the mgsa package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mgsa.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1123/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mgsa 1.40.0  (landing page)
Sebastian Bauer
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/mgsa
git_branch: RELEASE_3_13
git_last_commit: 77f80bf
git_last_commit_date: 2021-05-19 11:47:06 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: mgsa
Version: 1.40.0
Command: rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mgsa_1.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R mgsa.buildbin-libdir
StartedAt: 2021-10-15 03:05:40 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 03:06:50 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 69.9 seconds
RetCode: 0
Status:   OK  
PackageFile: mgsa_1.40.0.tgz
PackageFileSize: 494.5 KiB

Command output

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###
### Running command:
###
###   rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mgsa_1.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R mgsa.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mgsa.buildbin-libdir mgsa_1.40.0.tar.gz'
>>>>>>> 

* installing *source* package ‘mgsa’ ...
** using staged installation
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -I.  -fPIC  -Wall -g -O2  -c mgsa-core.c -o mgsa-core.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -I.  -fPIC  -Wall -g -O2  -c mgsa.c -o mgsa.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -I.  -fPIC  -Wall -g -O2  -c mt.c -o mt.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mgsa.so mgsa-core.o mgsa.o mt.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/mgsa.buildbin-libdir/00LOCK-mgsa/00new/mgsa/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mgsa)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mgsa.buildbin-libdir/mgsa/libs/mgsa.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "mgsa.buildbin-libdir/mgsa/libs/mgsa.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "mgsa.buildbin-libdir/mgsa/libs/mgsa.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "mgsa.buildbin-libdir/mgsa/libs/mgsa.so"