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This page was generated on 2021-10-15 15:06:41 -0400 (Fri, 15 Oct 2021).

CHECK results for memes on machv2

To the developers/maintainers of the memes package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/memes.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1069/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
memes 1.0.4  (landing page)
Spencer Nystrom
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/memes
git_branch: RELEASE_3_13
git_last_commit: 7a80e64
git_last_commit_date: 2021-08-06 09:00:42 -0400 (Fri, 06 Aug 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: memes
Version: 1.0.4
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:memes.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings memes_1.0.4.tar.gz
StartedAt: 2021-10-14 20:48:12 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 20:50:53 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 161.6 seconds
RetCode: 0
Status:   OK  
CheckDir: memes.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:memes.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings memes_1.0.4.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/memes.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘memes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘memes’ version ‘1.0.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘memes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
add_sequence 8.258  0.265   8.528
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

memes.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL memes
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘memes’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (memes)

Tests output


Example timings

memes.Rcheck/memes-Ex.timings

nameusersystemelapsed
add_sequence8.2580.2658.528
ame_compare_heatmap_methods0.7430.0110.756
check_meme_install1.5600.1181.680
drop_best_match0.0090.0030.011
example_ame0.1430.0030.146
example_ame_large0.0520.0010.052
force_best_match0.0140.0010.015
get_sequence0.6120.0150.634
has_duplicate_motifs0.2880.0140.304
importAme0.2670.0240.289
importDremeXML0.3560.0170.375
importFimo0.0860.0030.088
importMeme0.1440.0020.147
importStremeXML0.2260.0030.230
importTomTomXML0.4230.0030.426
meme_is_installed0.0150.0010.015
nest_tomtom0.0120.0010.013
plot_ame_heatmap0.4740.0060.481
plot_sequence_heatmap3.6430.0673.721
remove_duplicate_motifs0.0020.0010.003
runAme0.0140.0010.015
runDreme0.0180.0010.020
runFimo0.0150.0010.016
runMeme0.0110.0000.011
runTomTom0.0170.0010.018
update_best_match0.0930.0010.094
view_tomtom_hits1.0550.0061.063
write_fasta0.0030.0010.003