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This page was generated on 2021-10-15 15:05:44 -0400 (Fri, 15 Oct 2021).

INSTALL results for mbkmeans on nebbiolo1

To the developers/maintainers of the mbkmeans package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1050/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mbkmeans 1.8.0  (landing page)
Davide Risso
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/mbkmeans
git_branch: RELEASE_3_13
git_last_commit: 2d2b03a
git_last_commit_date: 2021-05-19 12:42:35 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: mbkmeans
Version: 1.8.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL mbkmeans
StartedAt: 2021-10-14 06:14:27 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 06:15:17 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 49.5 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL mbkmeans
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘mbkmeans’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:
/home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function ‘arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)’:
/home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:850:14: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  850 |         bool status;
      |              ^~~~~~
/home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function ‘Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::string, std::string, int, int, bool, double, int)’:
/home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:1446:14: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1446 |         bool status;
      |              ^~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o mbkmeans.so RcppExports.o mini_batch.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-mbkmeans/00new/mbkmeans/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mbkmeans)