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This page was generated on 2021-10-15 15:06:08 -0400 (Fri, 15 Oct 2021).

INSTALL results for iChip on tokay2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iChip.git to
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raw results

Package 895/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iChip 1.46.0  (landing page)
Qianxing Mo
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/iChip
git_branch: RELEASE_3_13
git_last_commit: fd29faf
git_last_commit_date: 2021-05-19 11:44:43 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: iChip
Version: 1.46.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/iChip_1.46.0.tar.gz && rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iChip.buildbin-libdir iChip_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL iChip_1.46.0.zip && rm iChip_1.46.0.tar.gz iChip_1.46.0.zip
StartedAt: 2021-10-14 06:56:14 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 06:57:13 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 59.0 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/iChip_1.46.0.tar.gz && rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iChip.buildbin-libdir iChip_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL iChip_1.46.0.zip && rm iChip_1.46.0.tar.gz iChip_1.46.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 45 2789k   45 1280k    0     0  3333k      0 --:--:-- --:--:-- --:--:-- 3333k
100 2789k  100 2789k    0     0  5166k      0 --:--:-- --:--:-- --:--:-- 5165k

install for i386

* installing *source* package 'iChip' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iChip.c -o iChip.o
iChip.c: In function 'iChip2':
iChip.c:23:51: warning: variable 'nrowm1' set but not used [-Wunused-but-set-variable]
   int sampleSize,LB,RB,i,j,r,nnoise,nsignal,state,nrowm1,wtsum;
                                                   ^~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o iChip.dll tmp.def iChip.o registerDynamicSymbol.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/iChip.buildbin-libdir/00LOCK-iChip/00new/iChip/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'iChip'
    finding HTML links ... done
    enrichreg                               html  
    iChip1                                  html  
    iChip2                                  html  
    lmtstat                                 html  
    oct4                                    html  
    p53                                     html  
** building package indices
** installing vignettes
   'iChip.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iChip' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iChip.c -o iChip.o
iChip.c: In function 'iChip2':
iChip.c:23:51: warning: variable 'nrowm1' set but not used [-Wunused-but-set-variable]
   int sampleSize,LB,RB,i,j,r,nnoise,nsignal,state,nrowm1,wtsum;
                                                   ^~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o iChip.dll tmp.def iChip.o registerDynamicSymbol.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/iChip.buildbin-libdir/iChip/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iChip' as iChip_1.46.0.zip
* DONE (iChip)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'iChip' successfully unpacked and MD5 sums checked