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This page was generated on 2021-10-15 15:06:08 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for iBMQ on tokay2

To the developers/maintainers of the iBMQ package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iBMQ.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 890/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iBMQ 1.32.0  (landing page)
Greg Imholte
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/iBMQ
git_branch: RELEASE_3_13
git_last_commit: 13d8d38
git_last_commit_date: 2021-05-19 11:55:04 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64... NOT SUPPORTED ...

Summary

Package: iBMQ
Version: 1.32.0
Command: rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.32.0.tar.gz
StartedAt: 2021-10-15 09:51:53 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 09:53:22 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 88.8 seconds
RetCode: 0
Status:   OK  
PackageFile: iBMQ_1.32.0.zip
PackageFileSize: 2.669 MiB

Command output

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###
### Running command:
###
###   rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.32.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'iBMQ' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c ARS.c -o ARS.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c RngStream.c -o RngStream.o
RngStream.c: In function 'RngStream_CreateStream':
RngStream.c:321:7: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=]
       strncpy (g->name, name, len + 1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RngStream.c:319:13: note: length computed here
       len = strlen (name);
             ^~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iBMQ_common.c -o iBMQ_common.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Cfile);
   ^~~~~~~~~~~~~
main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Sig2file);
   ^~~~~~~~~~~~~~~~
main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Mufile);
   ^~~~~~~~~~~~~~
main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Bfile);
   ^~~~~~~~~~~~~
main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Afile);
   ^~~~~~~~~~~~~
main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Pfile);
   ^~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c norm_gamma_generation.c -o norm_gamma_generation.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sparse.c -o sparse.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/i386/lib -lgsl -lgslcblas -lm -fopenmp -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/iBMQ.buildbin-libdir/00LOCK-iBMQ/00new/iBMQ/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'iBMQ'
    finding HTML links ... done
    PPA.liver                               html  
    calculateThreshold                      html  
    eqtlClassifier                          html  
    eqtlFinder                              html  
    eqtlMcmc                                html  
    gene                                    html  
    genepos                                 html  
    genotype.liver                          html  
    hotspotFinder                           html  
    iBMQ-package                            html  
    map.liver                               html  
    phenotype.liver                         html  
    probe.liver                             html  
    snp                                     html  
    snppos                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iBMQ' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c ARS.c -o ARS.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c RngStream.c -o RngStream.o
RngStream.c: In function 'RngStream_CreateStream':
RngStream.c:321:7: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=]
       strncpy (g->name, name, len + 1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RngStream.c:319:13: note: length computed here
       len = strlen (name);
             ^~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iBMQ_common.c -o iBMQ_common.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Cfile);
   ^~~~~~~~~~~~~
main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Sig2file);
   ^~~~~~~~~~~~~~~~
main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Mufile);
   ^~~~~~~~~~~~~~
main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Bfile);
   ^~~~~~~~~~~~~
main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Afile);
   ^~~~~~~~~~~~~
main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Pfile);
   ^~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c norm_gamma_generation.c -o norm_gamma_generation.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sparse.c -o sparse.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/x64/lib -lgsl -lgslcblas -lm -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/iBMQ.buildbin-libdir/iBMQ/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iBMQ' as iBMQ_1.32.0.zip
* DONE (iBMQ)