Mike Jiang
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/flowCore |
| git_branch: RELEASE_3_13 |
| git_last_commit: 1f5f4b6 |
| git_last_commit_date: 2021-05-19 11:38:20 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:35 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the flowCore package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowCore.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 647/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowCore 2.4.0 (landing page) Mike Jiang
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: flowCore |
| Version: 2.4.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowCore.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowCore_2.4.0.tar.gz |
| StartedAt: 2021-10-14 19:06:37 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 19:09:26 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 168.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowCore.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowCore.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowCore_2.4.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/flowCore.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowCore/DESCRIPTION’ ... OK
* this is package ‘flowCore’ version ‘2.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowCore’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 9.5Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 5.0Mb
extdata 1.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eval,compensatedParameter-missing : <anonymous>: no visible binding for
global variable ‘mat’
eval,compensatedParameter-missing : <anonymous>: no visible binding for
global variable ‘msv’
show,flowFrame: no visible global function definition for
‘capture.output’
Undefined global functions or variables:
capture.output mat msv
Consider adding
importFrom("utils", "capture.output")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/flowCore/libs/flowCore.so’:
Found ‘_rand’, possibly from ‘rand’ (C)
Found ‘_srand’, possibly from ‘srand’ (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
filterResultList-class 6.037 0.23 6.269
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/Users/biocbuild/bbs-3.13-bioc/meat/flowCore.Rcheck/00check.log’
for details.
flowCore.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flowCore ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘flowCore’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c FastLogicle.cpp -o FastLogicle.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Hyperlog.cpp -o Hyperlog.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Logicle.cpp -o Logicle.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c biexponential.cpp -o biexponential.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c convertRawBytes.cpp -o convertRawBytes.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c fcsTextParse.cpp -o fcsTextParse.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c hyperlogTransform.cpp -o hyperlogTransform.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c inPolygon.cpp -o inPolygon.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c inPolytope.cpp -o inPolytope.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c logicleTransform.cpp -o logicleTransform.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c poly_centroid.cpp -o poly_centroid.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c sortBytes.cpp -o sortBytes.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c uint2double.cpp -o uint2double.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RProtoBufLib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c zeroin.cpp -o zeroin.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o convertRawBytes.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o logicleTransform.o pairVectorRcppWrap.o poly_centroid.o sortBytes.o uint2double.o zeroin.o /Library/Frameworks/R.framework/Versions/4.1/Resources/library/cytolib/lib/libcytolib.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation if [ `uname -s` = 'Darwin' ]; then install_name_tool -change /usr/local/clang4/lib/libc++.1.dylib /usr/lib/libc++.1.dylib flowCore.so; fi installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-flowCore/00new/flowCore/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘HowTo-flowCore.Rnw’ using ‘UTF-8’ ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowCore)
flowCore.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(flowCore)
> library(flowStats)
>
>
> test_check("flowCore")
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:flowStats':
normalize
The following object is masked from 'package:flowCore':
normalize
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
══ Skipped tests ═══════════════════════════════════════════════════════════════
• dir.exists(dataPath) is not TRUE (1)
• file.exists(filename) is not TRUE (2)
[ FAIL 0 | WARN 10 | SKIP 3 | PASS 334 ]
>
> #devtools::test("~/rglab/workspace/flowCore")
>
> proc.time()
user system elapsed
24.308 1.375 25.787
flowCore.Rcheck/flowCore-Ex.timings
| name | user | system | elapsed | |
| EHtrans-class | 0.068 | 0.006 | 0.074 | |
| FCSTransTransform | 0.853 | 0.049 | 0.902 | |
| Subset-methods | 0.259 | 0.012 | 0.270 | |
| arcsinhTransform | 0.058 | 0.000 | 0.059 | |
| asinht-class | 0.034 | 0.001 | 0.035 | |
| asinhtGml2-class | 0.034 | 0.002 | 0.037 | |
| biexponentialTransform | 3.170 | 0.058 | 3.229 | |
| boundaryFilter-class | 0.092 | 0.004 | 0.096 | |
| characterOrNumeric-class | 0.002 | 0.001 | 0.002 | |
| characterOrParameters-class | 0.001 | 0.001 | 0.001 | |
| characterOrTransformation-class | 0.002 | 0.000 | 0.003 | |
| coerce | 0.058 | 0.004 | 0.062 | |
| collapse_desc | 0.933 | 0.052 | 0.986 | |
| compensatedParameter-class | 0.177 | 0.007 | 0.186 | |
| compensation-class | 0.327 | 0.035 | 0.362 | |
| decompensate | 0.050 | 0.002 | 0.053 | |
| dg1polynomial-class | 0.033 | 0.002 | 0.035 | |
| each_col | 0.036 | 0.004 | 0.041 | |
| ellipsoidGate-class | 0.095 | 0.003 | 0.098 | |
| exponential-class | 0.037 | 0.001 | 0.038 | |
| expressionFilter-class | 0.136 | 0.004 | 0.139 | |
| filter-methods | 1.022 | 0.038 | 1.061 | |
| filter-on-methods | 0.134 | 0.007 | 0.141 | |
| filterList-class | 0.005 | 0.001 | 0.005 | |
| filterResult-class | 0.001 | 0.001 | 0.001 | |
| filterResultList-class | 6.037 | 0.230 | 6.269 | |
| filterSummary-class | 0.101 | 0.008 | 0.109 | |
| filterSummaryList-class | 0.954 | 0.037 | 0.991 | |
| flowFrame-class | 4.517 | 0.165 | 4.692 | |
| flowSet-class | 2.604 | 0.107 | 2.713 | |
| fr_append_cols | 0.812 | 0.018 | 0.830 | |
| fsApply | 0.178 | 0.012 | 0.191 | |
| getIndexSort | 0.032 | 0.002 | 0.034 | |
| hyperlog-class | 1.322 | 0.024 | 1.347 | |
| hyperlogtGml2-class | 0.038 | 0.001 | 0.039 | |
| identifier-methods | 0.025 | 0.000 | 0.026 | |
| inverseLogicleTransform | 0.770 | 0.012 | 0.785 | |
| invsplitscale-class | 0.032 | 0.001 | 0.034 | |
| keyword-methods | 0.711 | 0.022 | 0.734 | |
| kmeansFilter-class | 0.168 | 0.003 | 0.171 | |
| linearTransform | 0.040 | 0.001 | 0.040 | |
| lintGml2-class | 0.039 | 0.007 | 0.045 | |
| lnTransform | 1.383 | 0.042 | 1.424 | |
| logTransform | 0.031 | 0.001 | 0.031 | |
| logarithm-class | 0.025 | 0.001 | 0.026 | |
| logicalFilterResult-class | 0.001 | 0.001 | 0.001 | |
| logicleTransform | 0.732 | 0.010 | 0.744 | |
| logicletGml2-class | 0.061 | 0.009 | 0.070 | |
| logtGml2-class | 0.033 | 0.002 | 0.033 | |
| manyFilterResult-class | 0.001 | 0.001 | 0.001 | |
| markernames | 0.673 | 0.014 | 0.691 | |
| multipleFilterResult-class | 0.001 | 0.001 | 0.001 | |
| parameters-methods | 0.024 | 0.002 | 0.026 | |
| polygonGate-class | 0.076 | 0.010 | 0.086 | |
| quadGate-class | 0.196 | 0.005 | 0.201 | |
| quadratic-class | 0.033 | 0.001 | 0.033 | |
| quadraticTransform | 0.030 | 0.001 | 0.030 | |
| ratio-class | 0.039 | 0.001 | 0.040 | |
| ratiotGml2-class | 0.030 | 0.002 | 0.032 | |
| read.FCS | 0.096 | 0.004 | 0.101 | |
| read.FCSheader | 0.006 | 0.003 | 0.009 | |
| read.flowSet | 0.114 | 0.002 | 0.116 | |
| rectangleGate-class | 0.116 | 0.008 | 0.125 | |
| rotate_gate | 0 | 0 | 0 | |
| sampleFilter-class | 0.056 | 0.002 | 0.058 | |
| scaleTransform | 0.043 | 0.001 | 0.044 | |
| scale_gate | 0.000 | 0.001 | 0.001 | |
| shift_gate | 0.000 | 0.001 | 0.001 | |
| singleParameterTransform-class | 0.001 | 0.001 | 0.003 | |
| sinht-class | 0.029 | 0.001 | 0.030 | |
| split-methods | 1.376 | 0.030 | 1.413 | |
| splitScaleTransform | 1.017 | 0.020 | 1.038 | |
| splitscale-class | 0.035 | 0.001 | 0.035 | |
| squareroot-class | 0.033 | 0.003 | 0.034 | |
| timeFilter-class | 1.954 | 0.054 | 2.010 | |
| transform-class | 0.001 | 0.000 | 0.001 | |
| transform | 1.176 | 0.021 | 1.199 | |
| transformFilter-class | 0.156 | 0.003 | 0.159 | |
| transformList-class | 0.691 | 0.024 | 0.715 | |
| transformMap-class | 0.000 | 0.000 | 0.001 | |
| transform_gate | 0.000 | 0.000 | 0.001 | |
| truncateTransform | 0.041 | 0.001 | 0.042 | |
| unitytransform-class | 0.022 | 0.000 | 0.023 | |
| write.FCS | 0.055 | 0.003 | 0.058 | |
| write.flowSet | 0.948 | 0.024 | 0.973 | |