Dongjun Chung
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/dpeak |
| git_branch: RELEASE_3_13 |
| git_last_commit: 893adb0 |
| git_last_commit_date: 2021-05-19 12:52:07 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:34 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the dpeak package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dpeak.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 530/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| dpeak 1.4.0 (landing page) Dongjun Chung
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: dpeak |
| Version: 1.4.0 |
| Command: rm -rf dpeak.buildbin-libdir && mkdir dpeak.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh dpeak_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R dpeak.buildbin-libdir |
| StartedAt: 2021-10-15 02:15:07 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 02:17:17 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 130.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: dpeak_1.4.0.tgz |
| PackageFileSize: 669.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf dpeak.buildbin-libdir && mkdir dpeak.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh dpeak_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R dpeak.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=dpeak.buildbin-libdir dpeak_1.4.0.tar.gz' >>>>>>> * installing *source* package ‘dpeak’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c dlength.cpp -o dlength.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c fraglen.cpp -o fraglen.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c ismaxZ0.cpp -o ismaxZ0.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c normalize.cpp -o normalize.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c samp.cpp -o samp.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c score.cpp -o score.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c stack.cpp -o stack.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dpeak.so dlength.o fraglen.o ismaxZ0.o normalize.o samp.o score.o stack.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.13-bioc/meat/dpeak.buildbin-libdir/00LOCK-dpeak/00new/dpeak/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dpeak) >>>>>>> >>>>>>> FIXING LINKS FOR dpeak.buildbin-libdir/dpeak/libs/dpeak.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "dpeak.buildbin-libdir/dpeak/libs/dpeak.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "dpeak.buildbin-libdir/dpeak/libs/dpeak.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "dpeak.buildbin-libdir/dpeak/libs/dpeak.so"