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This page was generated on 2021-10-15 15:06:21 -0400 (Fri, 15 Oct 2021).

INSTALL results for SamSPECTRAL on tokay2

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raw results

Package 1667/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SamSPECTRAL 1.46.0  (landing page)
Habil
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/SamSPECTRAL
git_branch: RELEASE_3_13
git_last_commit: 89f0f33
git_last_commit_date: 2021-05-19 11:44:51 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: SamSPECTRAL
Version: 1.46.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SamSPECTRAL_1.46.0.tar.gz && rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SamSPECTRAL.buildbin-libdir SamSPECTRAL_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SamSPECTRAL_1.46.0.zip && rm SamSPECTRAL_1.46.0.tar.gz SamSPECTRAL_1.46.0.zip
StartedAt: 2021-10-14 07:05:57 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 07:06:52 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 54.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SamSPECTRAL_1.46.0.tar.gz && rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SamSPECTRAL.buildbin-libdir SamSPECTRAL_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SamSPECTRAL_1.46.0.zip && rm SamSPECTRAL_1.46.0.tar.gz SamSPECTRAL_1.46.0.zip
###
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##############################################################################


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100  445k  100  445k    0     0  1472k      0 --:--:-- --:--:-- --:--:-- 1478k

install for i386

* installing *source* package 'SamSPECTRAL' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rinit.c -o Rinit.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c conductance_computation.c -o conductance_computation.o
conductance_computation.c: In function 'conductance_computation':
conductance_computation.c:155:17: warning: variable 'repres_ind' set but not used [-Wunused-but-set-variable]
  int *density, *repres_ind;
                 ^~~~~~~~~~
conductance_computation.c:155:7: warning: variable 'density' set but not used [-Wunused-but-set-variable]
  int *density, *repres_ind;
       ^~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c maximum_of_rows.c -o maximum_of_rows.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o SamSPECTRAL.dll tmp.def Rinit.o conductance_computation.o maximum_of_rows.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/SamSPECTRAL.buildbin-libdir/00LOCK-SamSPECTRAL/00new/SamSPECTRAL/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SamSPECTRAL'
    finding HTML links ... done
    Building_Communities                    html  
    Civilized_Spectral_Clustering           html  
    Conductance_Calculation                 html  
    Connecting                              html  
    SamSPECTRAL-package                     html  
    SamSPECTRAL                             html  
    check.SamSPECTRAL.input                 html  
    eigen.values.10                         html  
    eigen.values.1000                       html  
    kneepointDetection                      html  
    small                                   html  
    stmFSC                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SamSPECTRAL' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rinit.c -o Rinit.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c conductance_computation.c -o conductance_computation.o
conductance_computation.c: In function 'conductance_computation':
conductance_computation.c:155:17: warning: variable 'repres_ind' set but not used [-Wunused-but-set-variable]
  int *density, *repres_ind;
                 ^~~~~~~~~~
conductance_computation.c:155:7: warning: variable 'density' set but not used [-Wunused-but-set-variable]
  int *density, *repres_ind;
       ^~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c maximum_of_rows.c -o maximum_of_rows.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SamSPECTRAL.dll tmp.def Rinit.o conductance_computation.o maximum_of_rows.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SamSPECTRAL' as SamSPECTRAL_1.46.0.zip
* DONE (SamSPECTRAL)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SamSPECTRAL' successfully unpacked and MD5 sums checked