Nils Kurzawa
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/Rtpca |
| git_branch: RELEASE_3_13 |
| git_last_commit: acf0a22 |
| git_last_commit_date: 2021-05-19 12:53:36 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:20 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the Rtpca package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rtpca.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1649/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rtpca 1.2.0 (landing page) Nils Kurzawa
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: Rtpca |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Rtpca.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Rtpca_1.2.0.tar.gz |
| StartedAt: 2021-10-15 04:57:06 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 04:58:49 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 103.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Rtpca.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Rtpca.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Rtpca_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/Rtpca.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'Rtpca/DESCRIPTION' ... OK * this is package 'Rtpca' version '1.2.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Rtpca' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: 'tibble' All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .getRandomProteinPairs: no visible binding for global variable 'pair' Undefined global functions or variables: pair * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/Rtpca.Rcheck/00check.log' for details.
Rtpca.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Rtpca_1.2.0.tar.gz && rm -rf Rtpca.buildbin-libdir && mkdir Rtpca.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rtpca.buildbin-libdir Rtpca_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Rtpca_1.2.0.zip && rm Rtpca_1.2.0.tar.gz Rtpca_1.2.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
16 1768k 16 284k 0 0 933k 0 0:00:01 --:--:-- 0:00:01 933k
100 1768k 100 1768k 0 0 1634k 0 0:00:01 0:00:01 --:--:-- 1635k
install for i386
* installing *source* package 'Rtpca' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Rtpca'
finding HTML links ... done
CommonFeatures-tpcaResult-method html
ComplexAnnotation-tpcaResult-method html
ComplexBackgroundDistributionList-tpcaResult-method
html
ComplexRocTable-tpcaResult-method html
ContrastCondName-tpcaResult-method html
ContrastDistMat-tpcaResult-method html
ContrastList-tpcaResult-method html
CtrlCondName-tpcaResult-method html
DistMat-tpcaResult-method html
DistMethod-tpcaResult-method html
ObjList-tpcaResult-method html
PPiAnnotation-tpcaResult-method html
PPiRocTable-tpcaResult-method html
PPiRocTableAnno-tpcaResult-method html
SetCommonFeatures-tpcaResult-method html
SetComplexAnnotation-tpcaResult-method
html
SetComplexBackgroundDistributionList-tpcaResult-method
html
SetComplexRocTable-tpcaResult-method html
SetContrastCondName-tpcaResult-method html
SetContrastDistMat-tpcaResult-method html
SetCtrlCondName-tpcaResult-method html
SetDiffTpcaResultTable-tpcaResult-method
html
SetDistMat-tpcaResult-method html
SetDistMethod-tpcaResult-method html
SetPPiRocTable-tpcaResult-method html
SetPPiRocTableAnno-tpcaResult-method html
SetSummaryMethod-tpcaResult-method html
SetTpcaResultTable-tpcaResult-method html
SummaryMethod-tpcaResult-method html
createDistMat html
diffTpcaResultTable-tpcaResult-method html
ori_et_al_complex_ppis html
ori_et_al_complexes_df html
plotComplexRoc html
plotDiffTpcaVolcano html
plotPPiProfiles html
plotPPiRoc html
plotTpcaVolcano html
runDiffTPCA html
runTPCA html
string_ppi_df html
tpcaResult-class html
tpcaResultTable-tpcaResult-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Rtpca' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rtpca' as Rtpca_1.2.0.zip
* DONE (Rtpca)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Rtpca' successfully unpacked and MD5 sums checked
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Rtpca.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Rtpca)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tidyr
Attaching package: 'tidyr'
The following object is masked from 'package:testthat':
matches
>
> test_check("Rtpca")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 38 ]
>
> proc.time()
user system elapsed
4.51 0.23 4.71
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Rtpca.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Rtpca)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tidyr
Attaching package: 'tidyr'
The following object is masked from 'package:testthat':
matches
>
> test_check("Rtpca")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 38 ]
>
> proc.time()
user system elapsed
5.32 0.14 5.45
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Rtpca.Rcheck/examples_i386/Rtpca-Ex.timings
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Rtpca.Rcheck/examples_x64/Rtpca-Ex.timings
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