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This page was generated on 2021-10-15 15:06:19 -0400 (Fri, 15 Oct 2021).

INSTALL results for Ringo on tokay2

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raw results

Package 1585/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Ringo 1.56.0  (landing page)
J. Toedling
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/Ringo
git_branch: RELEASE_3_13
git_last_commit: 3da76e3
git_last_commit_date: 2021-05-19 11:38:56 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Ringo
Version: 1.56.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Ringo_1.56.0.tar.gz && rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Ringo.buildbin-libdir Ringo_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Ringo_1.56.0.zip && rm Ringo_1.56.0.tar.gz Ringo_1.56.0.zip
StartedAt: 2021-10-14 09:16:36 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 09:17:43 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 67.2 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Ringo_1.56.0.tar.gz && rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Ringo.buildbin-libdir Ringo_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Ringo_1.56.0.zip && rm Ringo_1.56.0.tar.gz Ringo_1.56.0.zip
###
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##############################################################################


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install for i386

* installing *source* package 'Ringo' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
     int * x, nval, hs, is, i;
                        ^~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mmedian.cpp -o mmedian.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c region_overlap.c -o region_overlap.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c ringo_init.c -o ringo_init.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Ringo.buildbin-libdir/00LOCK-Ringo/00new/Ringo/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'ls' from package 'base' in package 'Ringo'
** help
*** installing help indices
  converting help for package 'Ringo'
    finding HTML links ... done
    Ringo-internal                          html  
    arrayImage                              html  
    asExprSet                               html  
    autocorr                                html  
    cherByThreshold                         html  
    cherClass                               html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/Ringo.buildbin-libdir/00LOCK-Ringo/00new/Ringo/help/Cher.html
    chipAlongChrom                          html  
    chipAlongChromOld                       html  
    computeRunningMedians                   html  
    compute_gc                              html  
    compute_sliding_t                       html  
    corrPlot                                html  
    exportCherList                          html  
    extractProbeAnno                        html  
    features2Probes                         html  
    findChersOnSmoothed                     html  
    ftr2xys                                 html  
    getFeats                                html  
    newCER                                  html  
    nimblegenNorm                           html  
    nonzero                                 html  
    plotAutocorr                            html  
    plotBM                                  html  
    plot_cher                               html  
    posToProbeAnnoEnvironment               html  
    preprocess                              html  
    probeAnnoClass                          html  
    qopS4                                   html  
    quantilesOverPositions                  html  
    readNimblegen                           html  
    regionoverlap                           html  
    relateCERs                              html  
    sigGOTable                              html  
    sliding_meansd                          html  
    sliding_quantile                        html  
    twoGaussiansNull                        html  
    upperBoundNull                          html  
    validProbeAnno                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Ringo' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
     int * x, nval, hs, is, i;
                        ^~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mmedian.cpp -o mmedian.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c region_overlap.c -o region_overlap.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c ringo_init.c -o ringo_init.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Ringo.buildbin-libdir/Ringo/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Ringo' as Ringo_1.56.0.zip
* DONE (Ringo)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Ringo' successfully unpacked and MD5 sums checked