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### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RLassoCox.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RLassoCox_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/RLassoCox.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RLassoCox/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RLassoCox' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RLassoCox' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
RLassoCox-package   50.74  26.72   77.49
predict.cvRLassoCox 28.61  14.60   43.22
predict.RLassoCox   23.75  12.12   35.87
cvRLassoCox         25.98   8.35   34.33
RLassoCox           23.05   5.84   28.89
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
RLassoCox-package   50.15  20.89   71.14
RLassoCox           24.96  12.08   37.04
predict.cvRLassoCox 28.01   8.20   36.23
cvRLassoCox         26.52   9.15   35.67
predict.RLassoCox   25.58   8.10   33.67
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/RLassoCox_1.0.0.tar.gz && rm -rf RLassoCox.buildbin-libdir && mkdir RLassoCox.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RLassoCox.buildbin-libdir RLassoCox_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RLassoCox_1.0.0.zip && rm RLassoCox_1.0.0.tar.gz RLassoCox_1.0.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 12 1708k   12  219k    0     0   770k      0  0:00:02 --:--:--  0:00:02  771k
100 1708k  100 1708k    0     0  3569k      0 --:--:-- --:--:-- --:--:-- 3567k

install for i386

* installing *source* package 'RLassoCox' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RLassoCox'
    finding HTML links ... done
    RLassoCox-package                       html  
    RLassoCox                               html  
    cvRLassoCox                             html  
    dGMMirGraph                             html  
    mRNA_matrix                             html  
    predict.RLassoCox                       html  
    predict.cvRLassoCox                     html  
    rw                                      html  
    survData                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RLassoCox' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RLassoCox' as RLassoCox_1.0.0.zip
* DONE (RLassoCox)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'RLassoCox' successfully unpacked and MD5 sums checked