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This page was generated on 2021-10-15 15:06:13 -0400 (Fri, 15 Oct 2021).

INSTALL results for Mulcom on tokay2

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raw results

Package 1217/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Mulcom 1.42.0  (landing page)
Claudio Isella
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/Mulcom
git_branch: RELEASE_3_13
git_last_commit: d21dc82
git_last_commit_date: 2021-05-19 11:46:14 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: Mulcom
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Mulcom_1.42.0.tar.gz && rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Mulcom.buildbin-libdir Mulcom_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Mulcom_1.42.0.zip && rm Mulcom_1.42.0.tar.gz Mulcom_1.42.0.zip
StartedAt: 2021-10-14 08:30:32 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 08:31:28 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 55.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Mulcom_1.42.0.tar.gz && rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Mulcom.buildbin-libdir Mulcom_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Mulcom_1.42.0.zip && rm Mulcom_1.42.0.tar.gz Mulcom_1.42.0.zip
###
##############################################################################
##############################################################################


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100 1119k  100 1119k    0     0  1788k      0 --:--:-- --:--:-- --:--:-- 1791k

install for i386

* installing *source* package 'Mulcom' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mulLibs.cc -o mulLibs.o
mulLibs.cc: In function 'void Single_SimulationC(double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:708:33: warning: statement has no effect [-Wunused-value]
                 current_cluster ;
                                 ^
mulLibs.cc: In function 'void Complete_SimulationC(double*, int*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:1022:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
                  for ( int i = 0 ; i < sss2.size() ; i++ ) {
                                    ~~^~~~~~~~~~~~~
mulLibs.cc:1023:46: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
                          for ( int j = 0 ; j < harmonic_means.size() ; j++ ) {
                                            ~~^~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Mulcom.dll tmp.def mulLibs.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Mulcom.buildbin-libdir/00LOCK-Mulcom/00new/Mulcom/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Mulcom'
    finding HTML links ... done
    Affy                                    html  
    AffyIlmn                                html  
    Illumina                                html  
    Ilmn                                    html  
    MULCOM-class                            html  
    MULCOM_P                                html  
    harmonicMean                            html  
    limmaAffySymbols                        html  
    limmaIlmnSymbols                        html  
    mulCAND                                 html  
    mulCalc                                 html  
    mulDELTA                                html  
    mulDiff                                 html  
    mulFSG                                  html  
    mulIndex                                html  
    mulInt                                  html  
    mulMSE                                  html  
    mulOpt                                  html  
    mulOptPars                              html  
    mulOptPlot                              html  
    mulParOpt                               html  
    mulPerm                                 html  
    mulPermC                                html  
    mulSSE                                  html  
    mulScores                               html  
    mulcomGeneListIlmn                      html  
    samAffySymbols                          html  
    samIlmnSymbols                          html  
    samOptPars                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Mulcom' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mulLibs.cc -o mulLibs.o
mulLibs.cc: In function 'void Single_SimulationC(double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:708:33: warning: statement has no effect [-Wunused-value]
                 current_cluster ;
                                 ^
mulLibs.cc: In function 'void Complete_SimulationC(double*, int*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:1022:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
                  for ( int i = 0 ; i < sss2.size() ; i++ ) {
                                    ~~^~~~~~~~~~~~~
mulLibs.cc:1023:46: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
                          for ( int j = 0 ; j < harmonic_means.size() ; j++ ) {
                                            ~~^~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Mulcom.dll tmp.def mulLibs.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Mulcom.buildbin-libdir/Mulcom/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Mulcom' as Mulcom_1.42.0.zip
* DONE (Mulcom)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Mulcom' successfully unpacked and MD5 sums checked