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This page was generated on 2021-10-15 15:06:38 -0400 (Fri, 15 Oct 2021).

BUILD results for GWAS.BAYES on machv2

To the developers/maintainers of the GWAS.BAYES package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GWAS.BAYES.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 832/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GWAS.BAYES 1.2.0  (landing page)
Jake Williams
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/GWAS.BAYES
git_branch: RELEASE_3_13
git_last_commit: 008101f
git_last_commit_date: 2021-05-19 12:57:41 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: GWAS.BAYES
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GWAS.BAYES
StartedAt: 2021-10-14 12:30:38 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 12:37:41 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 422.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GWAS.BAYES
###
##############################################################################
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* checking for file ‘GWAS.BAYES/DESCRIPTION’ ... OK
* preparing ‘GWAS.BAYES’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VignetteGWASBAYES.Rmd’ using rmarkdown
Loading required package: Rcpp
Loading required package: RcppEigen
Loading required package: GA
Loading required package: foreach
Loading required package: iterators
Package 'GA' version 3.2.1
Type 'citation("GA")' for citing this R package in publications.

Attaching package: 'GA'

The following object is masked from 'package:utils':

    de

Loading required package: caret
Loading required package: ggplot2
Loading required package: lattice
Loading required package: doParallel
Loading required package: parallel
Loading required package: memoise
Loading required package: reshape2
Loading required package: Matrix

For example usage please run: vignette('qqman')

Citation appreciated but not required:
Turner, (2018). qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. Journal of Open Source Software, 3(25), 731, https://doi.org/10.21105/joss.00731.


Attaching package: 'qqman'

The following object is masked from 'package:lattice':

    qq

Warning in manhattan(Significant_SNPs, chr = "Chromosomes", bp = "Positions",  :
  No SNP column found. OK unless you're trying to highlight.
Quitting from lines 437-441 (VignetteGWASBAYES.Rmd) 
Error: processing vignette 'VignetteGWASBAYES.Rmd' failed with diagnostics:
arguments must have same length
--- failed re-building ‘VignetteGWASBAYES.Rmd’

SUMMARY: processing the following file failed:
  ‘VignetteGWASBAYES.Rmd’

Error: Vignette re-building failed.
Execution halted