Van Anh Huynh-Thu
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/GENIE3 |
| git_branch: RELEASE_3_13 |
| git_last_commit: a186e5b |
| git_last_commit_date: 2021-05-19 12:29:12 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:37 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the GENIE3 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GENIE3.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 732/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GENIE3 1.14.0 (landing page) Van Anh Huynh-Thu
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: GENIE3 |
| Version: 1.14.0 |
| Command: rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GENIE3_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GENIE3.buildbin-libdir |
| StartedAt: 2021-10-15 02:32:35 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 02:33:39 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 64.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GENIE3_1.14.0.tgz |
| PackageFileSize: 262.4 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GENIE3_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GENIE3.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GENIE3.buildbin-libdir GENIE3_1.14.0.tar.gz' >>>>>>> * installing *source* package ‘GENIE3’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c GENIE3.c -o GENIE3.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GENIE3.so GENIE3.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.13-bioc/meat/GENIE3.buildbin-libdir/00LOCK-GENIE3/00new/GENIE3/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘GENIE3’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment” in method for ‘GENIE3’ with signature ‘"ExpressionSet"’: no definition for class “ExpressionSet” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GENIE3) >>>>>>> >>>>>>> FIXING LINKS FOR GENIE3.buildbin-libdir/GENIE3/libs/GENIE3.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "GENIE3.buildbin-libdir/GENIE3/libs/GENIE3.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "GENIE3.buildbin-libdir/GENIE3/libs/GENIE3.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "GENIE3.buildbin-libdir/GENIE3/libs/GENIE3.so"