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This page was generated on 2021-10-15 15:06:04 -0400 (Fri, 15 Oct 2021).

INSTALL results for FamAgg on tokay2

To the developers/maintainers of the FamAgg package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FamAgg.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 614/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FamAgg 1.20.0  (landing page)
Johannes Rainer
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/FamAgg
git_branch: RELEASE_3_13
git_last_commit: b92025e
git_last_commit_date: 2021-05-19 12:16:52 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: FamAgg
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/FamAgg_1.20.0.tar.gz && rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FamAgg.buildbin-libdir FamAgg_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL FamAgg_1.20.0.zip && rm FamAgg_1.20.0.tar.gz FamAgg_1.20.0.zip
StartedAt: 2021-10-14 07:26:17 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 07:28:34 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 137.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/FamAgg_1.20.0.tar.gz && rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FamAgg.buildbin-libdir FamAgg_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL FamAgg_1.20.0.zip && rm FamAgg_1.20.0.tar.gz FamAgg_1.20.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  252k  100  252k    0     0   951k      0 --:--:-- --:--:-- --:--:--  956k

install for i386

* installing *source* package 'FamAgg' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'pedigree' in package 'FamAgg'
in method for 'countGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'countGenerations' with signature '"pedigree"': no definition for class "pedigree"
in method for 'estimateGenerations' with signature '"pedigree"': no definition for class "pedigree"
in method for 'estimateGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'generationsFrom' with signature '"pedigree"': no definition for class "pedigree"
in method for 'generationsFrom' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAncestors' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAncestors' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getChildren' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getChildren' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getCommonAncestor' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getCommonAncestor' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getMissingMate' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getMissingMate' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getSiblings' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getSiblings' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getAll' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAll' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getExternalMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getExternalMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getGenerationMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getGenerationMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getGenerationSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getGenerationSexMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getSexMatched' with signature '"pedigree"': no definition for class "pedigree"
** help
*** installing help indices
  converting help for package 'FamAgg'
    finding HTML links ... done
    FABinTestResults                        html  
    FAData-analysis                         html  
    FAData                                  html  
    FAGenIndexResults                       html  
    FAIncidenceRateResults                  html  
    FAKinGroupResults                       html  
    FAKinSumResults                         html  
    FAProbResults                           html  
    FAStdIncidenceRateResults               html  
    Pedigree-utils                          html  
    defineControls                          html  
    kinshipPairs                            html  
    plotting-functions                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'FamAgg' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FamAgg' as FamAgg_1.20.0.zip
* DONE (FamAgg)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'FamAgg' successfully unpacked and MD5 sums checked