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CHECK report for unifiedWMWqPCR on merida1

This page was generated on 2021-05-06 12:37:18 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the unifiedWMWqPCR package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1923/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
unifiedWMWqPCR 1.26.0  (landing page)
Joris Meys
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/unifiedWMWqPCR
Branch: RELEASE_3_12
Last Commit: 3463add
Last Changed Date: 2020-10-27 10:54:53 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: unifiedWMWqPCR
Version: 1.26.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings unifiedWMWqPCR_1.26.0.tar.gz
StartedAt: 2021-05-06 07:09:16 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 07:10:21 -0400 (Thu, 06 May 2021)
EllapsedTime: 65.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: unifiedWMWqPCR.Rcheck
Warnings: 1

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings unifiedWMWqPCR_1.26.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/unifiedWMWqPCR.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘unifiedWMWqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘unifiedWMWqPCR’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘unifiedWMWqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Documented arguments not in \usage in documentation object 'getEstimate':
  ‘...’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/Users/biocbuild/bbs-3.12-bioc/meat/unifiedWMWqPCR.Rcheck/00check.log’
for details.



Installation output

unifiedWMWqPCR.Rcheck/00install.out

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL unifiedWMWqPCR
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘unifiedWMWqPCR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘order’ from package ‘base’ in package ‘unifiedWMWqPCR’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (unifiedWMWqPCR)

Tests output


Example timings

unifiedWMWqPCR.Rcheck/unifiedWMWqPCR-Ex.timings

nameusersystemelapsed
NBdata0.0530.0070.060
as.matrix.uwmwEstimate0.4060.0290.437
as.matrix.uwmwRes0.3760.0220.462
forestplot-methods0.5850.0190.606
getEstimate-methods0.4190.0310.451
plot0.4990.0120.513
sort_uwmwRes0.4250.0140.440
uWMW-methods0.9250.0440.972
uwmw_Accessors0.4550.0140.471
uwmw_Extract0.4560.0200.477
volcanopar0.0000.0000.001
volcanoplot-methods0.3760.0080.384