Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for sparseMatrixStats on malbec1

This page was generated on 2021-05-06 12:29:14 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the sparseMatrixStats package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1755/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sparseMatrixStats 1.2.1  (landing page)
Constantin Ahlmann-Eltze
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/sparseMatrixStats
Branch: RELEASE_3_12
Last Commit: 9726f3d
Last Changed Date: 2021-02-02 10:59:57 -0400 (Tue, 02 Feb 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: sparseMatrixStats
Version: 1.2.1
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL sparseMatrixStats
StartedAt: 2021-05-05 16:09:26 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 16:09:58 -0400 (Wed, 05 May 2021)
EllapsedTime: 32.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL sparseMatrixStats
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘sparseMatrixStats’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c SparseMatrixView.cpp -o SparseMatrixView.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c methods.cpp -o methods.o
In file included from methods.cpp:6:0:
quantile.h: In instantiation of ‘double quantile_sparse(T, int, double) [with T = VectorSubsetView<14>]’:
quantile.h:85:80:   required from here
quantile.h:35:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of ‘dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)> [with auto:15 = SkipNAVectorSubsetView<14>; auto:16 = SkipNAVectorSubsetView<13>]’:
methods.cpp:25:18:   required from ‘reduce_matrix_double(Rcpp::S4, bool, Functor)::<lambda(ColumnView::col_container)> [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>]’
methods.cpp:22:8:   required from ‘struct reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]::<lambda(class ColumnView::col_container)>’
methods.cpp:21:19:   required from ‘Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]’
methods.cpp:378:4:   required from here
methods.cpp:351:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of ‘dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)> [with auto:15 = VectorSubsetView<14>; auto:16 = VectorSubsetView<13>]’:
methods.cpp:30:18:   required from ‘reduce_matrix_double(Rcpp::S4, bool, Functor)::<lambda(ColumnView::col_container)> [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>]’
methods.cpp:29:8:   required from ‘struct reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]::<lambda(class ColumnView::col_container)>’
methods.cpp:28:19:   required from ‘Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:15, auto:16, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]’
methods.cpp:378:4:   required from here
methods.cpp:351:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from methods.cpp:6:0:
quantile.h: In instantiation of ‘double quantile_sparse(T, int, double) [with T = SkipNAVectorSubsetView<14>]’:
methods.cpp:226:27:   required from ‘dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:5, auto:6, int)> [with auto:5 = SkipNAVectorSubsetView<14>; auto:6 = SkipNAVectorSubsetView<13>]’
methods.cpp:25:18:   required from ‘reduce_matrix_double(Rcpp::S4, bool, Functor)::<lambda(ColumnView::col_container)> [with Functor = dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:5, auto:6, int)>]’
methods.cpp:22:8:   required from ‘struct reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:5, auto:6, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]::<lambda(class ColumnView::col_container)>’
methods.cpp:21:19:   required from ‘Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:5, auto:6, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]’
methods.cpp:227:4:   required from here
quantile.h:35:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c row_methods.cpp -o row_methods.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o sparseMatrixStats.so RcppExports.o SparseMatrixView.o methods.o row_methods.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-sparseMatrixStats/00new/sparseMatrixStats/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sparseMatrixStats)