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BUILD BIN report for atSNP on merida1

This page was generated on 2021-05-06 12:34:21 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the atSNP package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 100/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
atSNP 1.6.1  (landing page)
Sunyoung Shin
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/atSNP
Branch: RELEASE_3_12
Last Commit: 7864975
Last Changed Date: 2021-04-26 19:17:51 -0400 (Mon, 26 Apr 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: atSNP
Version: 1.6.1
Command: rm -rf atSNP.buildbin-libdir && mkdir atSNP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh atSNP_1.6.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R atSNP.buildbin-libdir
StartedAt: 2021-05-06 07:56:23 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 07:57:21 -0400 (Thu, 06 May 2021)
EllapsedTime: 58.4 seconds
RetCode: 0
Status:   OK  
PackageFile: atSNP_1.6.1.tgz
PackageFileSize: 1.057 MiB

Command output

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###
### Running command:
###
###   rm -rf atSNP.buildbin-libdir && mkdir atSNP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh atSNP_1.6.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R atSNP.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=atSNP.buildbin-libdir atSNP_1.6.1.tar.gz'
>>>>>>> 

* installing *source* package ‘atSNP’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ImportanceSample.cpp -o ImportanceSample.o
In file included from ImportanceSample.cpp:1:
In file included from ./MotifScore.h:4:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ImportanceSampleChange.cpp -o ImportanceSampleChange.o
In file included from ImportanceSampleChange.cpp:1:
In file included from ./MotifScore.h:4:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ImportanceSampleDiff.cpp -o ImportanceSampleDiff.o
In file included from ImportanceSampleDiff.cpp:1:
In file included from ./MotifScore.h:4:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c MotifScore.cpp -o MotifScore.o
In file included from MotifScore.cpp:1:
In file included from ./MotifScore.h:4:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o atSNP.so ImportanceSample.o ImportanceSampleChange.o ImportanceSampleDiff.o MotifScore.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/atSNP.buildbin-libdir/00LOCK-atSNP/00new/atSNP/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (atSNP)


>>>>>>> 
>>>>>>> FIXING LINKS FOR atSNP.buildbin-libdir/atSNP/libs/atSNP.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "atSNP.buildbin-libdir/atSNP/libs/atSNP.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "atSNP.buildbin-libdir/atSNP/libs/atSNP.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "atSNP.buildbin-libdir/atSNP/libs/atSNP.so"