Vlad Petyuk
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/MSnID |
| Branch: RELEASE_3_12 |
| Last Commit: f0cef77 |
| Last Changed Date: 2020-10-27 10:59:05 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:22 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the MSnID package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1162/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MSnID 1.24.0 (landing page) Vlad Petyuk
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MSnID |
| Version: 1.24.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MSnID_1.24.0.tar.gz && rm -rf MSnID.buildbin-libdir && mkdir MSnID.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSnID.buildbin-libdir MSnID_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MSnID_1.24.0.zip && rm MSnID_1.24.0.tar.gz MSnID_1.24.0.zip |
| StartedAt: 2021-05-05 17:45:56 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:46:53 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 56.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MSnID_1.24.0.tar.gz && rm -rf MSnID.buildbin-libdir && mkdir MSnID.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSnID.buildbin-libdir MSnID_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MSnID_1.24.0.zip && rm MSnID_1.24.0.tar.gz MSnID_1.24.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 2619k 100 2619k 0 0 40.4M 0 --:--:-- --:--:-- --:--:-- 41.2M
install for i386
* installing *source* package 'MSnID' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MSnID'
finding HTML links ... done
MSnID-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpART3zf/R.INSTALL1a702d8a53fe/MSnID/man/MSnID-class.Rd:67: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpART3zf/R.INSTALL1a702d8a53fe/MSnID/man/MSnID-class.Rd:83: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpART3zf/R.INSTALL1a702d8a53fe/MSnID/man/MSnID-class.Rd:104: file link 'proteins' in package 'MSnID' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpART3zf/R.INSTALL1a702d8a53fe/MSnID/man/MSnID-class.Rd:190: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
MSnID-package html
MSnIDFilter-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpART3zf/R.INSTALL1a702d8a53fe/MSnID/man/MSnIDFilter-class.Rd:86: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
accessions html
add_mod_symbol html
apply_filter html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpART3zf/R.INSTALL1a702d8a53fe/MSnID/man/apply_filter.Rd:20: file link 'MSnIDFilter' in package 'MSnID' does not exist and so has been treated as a topic
assess_missed_cleavages html
assess_termini html
correct_peak_selection html
data html
evaluate_filter html
fetch_conversion_table html
id_quality html
infer_parsimonious_accessions html
map_mod_sites html
mass_measurement_error html
optimize_filter html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpART3zf/R.INSTALL1a702d8a53fe/MSnID/man/optimize_filter.Rd:48: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpART3zf/R.INSTALL1a702d8a53fe/MSnID/man/optimize_filter.Rd:67: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
peptides html
psms html
read_mzIDs html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpART3zf/R.INSTALL1a702d8a53fe/MSnID/man/read_mzIDs.Rd:11: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
recalibrate html
remap_accessions-method html
remap_fasta_entry_names html
report_mods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MSnID' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSnID' as MSnID_1.24.0.zip
* DONE (MSnID)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'MSnID' successfully unpacked and MD5 sums checked