Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

BUILD BIN report for MEDME on merida1

This page was generated on 2021-05-06 12:35:37 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the MEDME package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1033/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MEDME 1.50.0  (landing page)
Mattia Pelizzola
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/MEDME
Branch: RELEASE_3_12
Last Commit: 94e4b45
Last Changed Date: 2020-10-27 10:34:22 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: MEDME
Version: 1.50.0
Command: rm -rf MEDME.buildbin-libdir && mkdir MEDME.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MEDME_1.50.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MEDME.buildbin-libdir
StartedAt: 2021-05-06 09:10:03 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:10:54 -0400 (Thu, 06 May 2021)
EllapsedTime: 51.8 seconds
RetCode: 0
Status:   OK  
PackageFile: MEDME_1.50.0.tgz
PackageFileSize: 619.7 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MEDME.buildbin-libdir && mkdir MEDME.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MEDME_1.50.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MEDME.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MEDME.buildbin-libdir MEDME_1.50.0.tar.gz'
>>>>>>> 

* installing *source* package ‘MEDME’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c MEDMEweight.c -o MEDMEweight.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MEDME.so MEDMEweight.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/MEDME.buildbin-libdir/00LOCK-MEDME/00new/MEDME/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MEDME)


>>>>>>> 
>>>>>>> FIXING LINKS FOR MEDME.buildbin-libdir/MEDME/libs/MEDME.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "MEDME.buildbin-libdir/MEDME/libs/MEDME.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "MEDME.buildbin-libdir/MEDME/libs/MEDME.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "MEDME.buildbin-libdir/MEDME/libs/MEDME.so"