Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:35:22 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the IMPCdata package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 888/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
IMPCdata 1.26.0 (landing page) Jeremy Mason
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: IMPCdata |
Version: 1.26.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMPCdata_1.26.0.tar.gz |
StartedAt: 2021-05-06 02:49:26 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 02:51:14 -0400 (Thu, 06 May 2021) |
EllapsedTime: 107.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: IMPCdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMPCdata_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/IMPCdata.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IMPCdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘IMPCdata’ version ‘1.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IMPCdata’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getPhenCenters 0.199 0.022 13.563 getProcedures 0.086 0.009 5.440 getStrains 0.075 0.008 6.147 printStrains 0.069 0.009 10.245 getIMPCDataset 0.021 0.004 6.888 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
IMPCdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL IMPCdata ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘IMPCdata’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IMPCdata)
IMPCdata.Rcheck/IMPCdata-Ex.timings
name | user | system | elapsed | |
getAlleles | 0.094 | 0.013 | 3.265 | |
getGenes | 0.088 | 0.009 | 3.361 | |
getIMPCDataset | 0.021 | 0.004 | 6.888 | |
getIMPCTable | 0.064 | 0.012 | 2.755 | |
getName | 0.016 | 0.002 | 1.014 | |
getParameters | 0.101 | 0.010 | 3.508 | |
getPhenCenters | 0.199 | 0.022 | 13.563 | |
getPipelines | 0.090 | 0.009 | 4.798 | |
getProcedures | 0.086 | 0.009 | 5.440 | |
getStrains | 0.075 | 0.008 | 6.147 | |
getZygosities | 0.021 | 0.002 | 0.489 | |
printAlleles | 0.078 | 0.009 | 3.340 | |
printGenes | 0.072 | 0.008 | 3.271 | |
printParameters | 0.084 | 0.008 | 3.388 | |
printPhenCenters | 0.026 | 0.003 | 3.861 | |
printPipelines | 0.083 | 0.008 | 4.558 | |
printProcedures | 0.078 | 0.008 | 4.881 | |
printStrains | 0.069 | 0.009 | 10.245 | |