Multiple platform build/check report for BioC 3.12 - CHECK report for Herper on malbec1

Package: Herper

Version: 1.0.2

Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:Herper.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings Herper_1.0.2.tar.gz

StartedAt: 2021-05-06 02:23:18 -0400 (Thu, 06 May 2021)

EndedAt: 2021-05-06 02:38:08 -0400 (Thu, 06 May 2021)

EllapsedTime: 890.3 seconds

RetCode: 0

Status: OK

CheckDir: Herper.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:Herper.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings Herper_1.0.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/Herper.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Herper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Herper’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Herper’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
ListCondaEnvironments 214.828 12.572 251.307
UseEnvironments       167.252  3.780 174.929
install_CondaSysReqs  125.896  6.868 135.812
install_CondaTools     32.980  3.244  37.239
SaveEnvironments       16.276  1.004  20.190
ListCondaPackages      11.660  0.840  13.411
search_conda           10.380  0.780  11.026
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL Herper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘Herper’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Herper)


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Herper)
Loading required package: reticulate
> 
> test_check("Herper")
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh'
Content type 'application/x-sh' length 94235922 bytes (89.9 MB)
==================================================
downloaded 89.9 MB

PREFIX=/tmp/RtmpvKKYVT/Test
Unpacking payload ...

  0%|          | 0/36 [00:00<?, ?it/s]
Extracting : urllib3-1.25.11-py_0.conda:   0%|          | 0/36 [00:00<?, ?it/s]
Extracting : libgcc-ng-9.1.0-hdf63c60_0.conda:   3%|▎         | 1/36 [00:00<00:10,  3.36it/s]
Extracting : libgcc-ng-9.1.0-hdf63c60_0.conda:   6%|▌         | 2/36 [00:00<00:05,  6.72it/s]
Extracting : _libgcc_mutex-0.1-main.conda:   6%|▌         | 2/36 [00:00<00:05,  6.72it/s]    
Extracting : cffi-1.14.3-py38h261ae71_2.conda:   8%|▊         | 3/36 [00:00<00:04,  6.72it/s]
Extracting : pyopenssl-19.1.0-pyhd3eb1b0_1.conda:  11%|█         | 4/36 [00:00<00:04,  6.72it/s]
Extracting : cryptography-3.2.1-py38h3c74f83_1.conda:  14%|█▍        | 5/36 [00:00<00:04,  6.72it/s]
Extracting : idna-2.10-py_0.conda:  17%|█▋        | 6/36 [00:00<00:04,  6.72it/s]                   
Extracting : libedit-3.1.20191231-h14c3975_1.conda:  19%|█▉        | 7/36 [00:00<00:04,  6.72it/s]
Extracting : conda-4.9.2-py38h06a4308_0.conda:  22%|██▏       | 8/36 [00:00<00:04,  6.72it/s]     
Extracting : brotlipy-0.7.0-py38h27cfd23_1003.conda:  25%|██▌       | 9/36 [00:00<00:04,  6.72it/s]
Extracting : certifi-2020.6.20-pyhd3eb1b0_3.conda:  28%|██▊       | 10/36 [00:00<00:03,  6.72it/s] 
Extracting : readline-8.0-h7b6447c_0.conda:  31%|███       | 11/36 [00:00<00:03,  6.72it/s]       
Extracting : tk-8.6.10-hbc83047_0.conda:  33%|███▎      | 12/36 [00:00<00:03,  6.72it/s]   
Extracting : sqlite-3.33.0-h62c20be_0.conda:  36%|███▌      | 13/36 [00:00<00:03,  6.72it/s]
Extracting : pycparser-2.20-py_2.conda:  39%|███▉      | 14/36 [00:00<00:03,  6.72it/s]     
Extracting : chardet-3.0.4-py38h06a4308_1003.conda:  42%|████▏     | 15/36 [00:00<00:03,  6.72it/s]
Extracting : xz-5.2.5-h7b6447c_0.conda:  44%|████▍     | 16/36 [00:00<00:02,  6.72it/s]            
Extracting : pip-20.2.4-py38h06a4308_0.conda:  47%|████▋     | 17/36 [00:00<00:02,  6.72it/s]
Extracting : pycosat-0.6.3-py38h7b6447c_1.conda:  50%|█████     | 18/36 [00:00<00:02,  6.72it/s]
Extracting : openssl-1.1.1h-h7b6447c_0.conda:  53%|█████▎    | 19/36 [00:00<00:02,  6.72it/s]   
Extracting : libstdcxx-ng-9.1.0-hdf63c60_0.conda:  56%|█████▌    | 20/36 [00:00<00:02,  6.72it/s]
Extracting : conda-package-handling-1.7.2-py38h03888b9_0.conda:  58%|█████▊    | 21/36 [00:00<00:02,  6.72it/s]
Extracting : ncurses-6.2-he6710b0_1.conda:  61%|██████    | 22/36 [00:00<00:02,  6.72it/s]                     
Extracting : ld_impl_linux-64-2.33.1-h53a641e_7.conda:  64%|██████▍   | 23/36 [00:00<00:01,  6.72it/s]
Extracting : ca-certificates-2020.10.14-0.conda:  67%|██████▋   | 24/36 [00:00<00:01,  6.72it/s]      
Extracting : libffi-3.3-he6710b0_2.conda:  69%|██████▉   | 25/36 [00:00<00:01,  6.72it/s]       
Extracting : ruamel_yaml-0.15.87-py38h7b6447c_1.conda:  72%|███████▏  | 26/36 [00:00<00:01,  6.72it/s]
Extracting : wheel-0.35.1-pyhd3eb1b0_0.conda:  75%|███████▌  | 27/36 [00:00<00:01,  6.72it/s]         
Extracting : setuptools-50.3.1-py38h06a4308_1.conda:  78%|███████▊  | 28/36 [00:00<00:01,  6.72it/s]
Extracting : zlib-1.2.11-h7b6447c_3.conda:  81%|████████  | 29/36 [00:00<00:01,  6.72it/s]          
Extracting : python-3.8.5-h7579374_1.conda:  83%|████████▎ | 30/36 [00:00<00:00,  6.72it/s]
Extracting : python-3.8.5-h7579374_1.conda:  86%|████████▌ | 31/36 [00:00<00:00,  8.99it/s]
Extracting : yaml-0.2.5-h7b6447c_0.conda:  86%|████████▌ | 31/36 [00:00<00:00,  8.99it/s]  
Extracting : six-1.15.0-py38h06a4308_0.conda:  89%|████████▉ | 32/36 [00:00<00:00,  8.99it/s]
Extracting : tqdm-4.51.0-pyhd3eb1b0_0.conda:  92%|█████████▏| 33/36 [00:00<00:00,  8.99it/s] 
Extracting : requests-2.24.0-py_0.conda:  94%|█████████▍| 34/36 [00:00<00:00,  8.99it/s]    
Extracting : pysocks-1.7.1-py38h06a4308_0.conda:  97%|█████████▋| 35/36 [00:00<00:00,  8.99it/s]
                                                                                                
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/RtmpvKKYVT/Test

  added / updated specs:
    - _libgcc_mutex==0.1=main
    - brotlipy==0.7.0=py38h27cfd23_1003
    - ca-certificates==2020.10.14=0
    - certifi==2020.6.20=pyhd3eb1b0_3
    - cffi==1.14.3=py38h261ae71_2
    - chardet==3.0.4=py38h06a4308_1003
    - conda-package-handling==1.7.2=py38h03888b9_0
    - conda==4.9.2=py38h06a4308_0
    - cryptography==3.2.1=py38h3c74f83_1
    - idna==2.10=py_0
    - ld_impl_linux-64==2.33.1=h53a641e_7
    - libedit==3.1.20191231=h14c3975_1
    - libffi==3.3=he6710b0_2
    - libgcc-ng==9.1.0=hdf63c60_0
    - libstdcxx-ng==9.1.0=hdf63c60_0
    - ncurses==6.2=he6710b0_1
    - openssl==1.1.1h=h7b6447c_0
    - pip==20.2.4=py38h06a4308_0
    - pycosat==0.6.3=py38h7b6447c_1
    - pycparser==2.20=py_2
    - pyopenssl==19.1.0=pyhd3eb1b0_1
    - pysocks==1.7.1=py38h06a4308_0
    - python==3.8.5=h7579374_1
    - readline==8.0=h7b6447c_0
    - requests==2.24.0=py_0
    - ruamel_yaml==0.15.87=py38h7b6447c_1
    - setuptools==50.3.1=py38h06a4308_1
    - six==1.15.0=py38h06a4308_0
    - sqlite==3.33.0=h62c20be_0
    - tk==8.6.10=hbc83047_0
    - tqdm==4.51.0=pyhd3eb1b0_0
    - urllib3==1.25.11=py_0
    - wheel==0.35.1=pyhd3eb1b0_0
    - xz==5.2.5=h7b6447c_0
    - yaml==0.2.5=h7b6447c_0
    - zlib==1.2.11=h7b6447c_3


The following NEW packages will be INSTALLED:

  _libgcc_mutex      pkgs/main/linux-64::_libgcc_mutex-0.1-main
  brotlipy           pkgs/main/linux-64::brotlipy-0.7.0-py38h27cfd23_1003
  ca-certificates    pkgs/main/linux-64::ca-certificates-2020.10.14-0
  certifi            pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3
  cffi               pkgs/main/linux-64::cffi-1.14.3-py38h261ae71_2
  chardet            pkgs/main/linux-64::chardet-3.0.4-py38h06a4308_1003
  conda              pkgs/main/linux-64::conda-4.9.2-py38h06a4308_0
  conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.7.2-py38h03888b9_0
  cryptography       pkgs/main/linux-64::cryptography-3.2.1-py38h3c74f83_1
  idna               pkgs/main/noarch::idna-2.10-py_0
  ld_impl_linux-64   pkgs/main/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
  libedit            pkgs/main/linux-64::libedit-3.1.20191231-h14c3975_1
  libffi             pkgs/main/linux-64::libffi-3.3-he6710b0_2
  libgcc-ng          pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0
  libstdcxx-ng       pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
  ncurses            pkgs/main/linux-64::ncurses-6.2-he6710b0_1
  openssl            pkgs/main/linux-64::openssl-1.1.1h-h7b6447c_0
  pip                pkgs/main/linux-64::pip-20.2.4-py38h06a4308_0
  pycosat            pkgs/main/linux-64::pycosat-0.6.3-py38h7b6447c_1
  pycparser          pkgs/main/noarch::pycparser-2.20-py_2
  pyopenssl          pkgs/main/noarch::pyopenssl-19.1.0-pyhd3eb1b0_1
  pysocks            pkgs/main/linux-64::pysocks-1.7.1-py38h06a4308_0
  python             pkgs/main/linux-64::python-3.8.5-h7579374_1
  readline           pkgs/main/linux-64::readline-8.0-h7b6447c_0
  requests           pkgs/main/noarch::requests-2.24.0-py_0
  ruamel_yaml        pkgs/main/linux-64::ruamel_yaml-0.15.87-py38h7b6447c_1
  setuptools         pkgs/main/linux-64::setuptools-50.3.1-py38h06a4308_1
  six                pkgs/main/linux-64::six-1.15.0-py38h06a4308_0
  sqlite             pkgs/main/linux-64::sqlite-3.33.0-h62c20be_0
  tk                 pkgs/main/linux-64::tk-8.6.10-hbc83047_0
  tqdm               pkgs/main/noarch::tqdm-4.51.0-pyhd3eb1b0_0
  urllib3            pkgs/main/noarch::urllib3-1.25.11-py_0
  wheel              pkgs/main/noarch::wheel-0.35.1-pyhd3eb1b0_0
  xz                 pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
  yaml               pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
  zlib               pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3


Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/RtmpvKKYVT/Test

  added / updated specs:
    - conda


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2021.4.13  |       h06a4308_1         114 KB
    certifi-2020.12.5          |   py38h06a4308_0         141 KB
    cffi-1.14.5                |   py38h261ae71_0         224 KB
    chardet-4.0.0              |py38h06a4308_1003         194 KB
    conda-4.10.1               |   py38h06a4308_1         2.9 MB
    conda-package-handling-1.7.3|   py38h27cfd23_1         884 KB
    cryptography-3.4.7         |   py38hd23ed53_0         913 KB
    idna-2.10                  |     pyhd3eb1b0_0          52 KB
    openssl-1.1.1k             |       h27cfd23_0         2.5 MB
    pip-21.0.1                 |   py38h06a4308_0         1.8 MB
    pyopenssl-20.0.1           |     pyhd3eb1b0_1          49 KB
    readline-8.1               |       h27cfd23_0         362 KB
    requests-2.25.1            |     pyhd3eb1b0_0          52 KB
    ruamel_yaml-0.15.100       |   py38h27cfd23_0         258 KB
    setuptools-52.0.0          |   py38h06a4308_0         714 KB
    sqlite-3.35.4              |       hdfb4753_0         981 KB
    tqdm-4.59.0                |     pyhd3eb1b0_1          93 KB
    urllib3-1.26.4             |     pyhd3eb1b0_0         105 KB
    wheel-0.36.2               |     pyhd3eb1b0_0          33 KB
    ------------------------------------------------------------
                                           Total:        12.2 MB

The following packages will be REMOVED:

  libedit-3.1.20191231-h14c3975_1

The following packages will be UPDATED:

  ca-certificates                              2020.10.14-0 --> 2021.4.13-h06a4308_1
  certifi            pkgs/main/noarch::certifi-2020.6.20-p~ --> pkgs/main/linux-64::certifi-2020.12.5-py38h06a4308_0
  cffi                                1.14.3-py38h261ae71_2 --> 1.14.5-py38h261ae71_0
  chardet                           3.0.4-py38h06a4308_1003 --> 4.0.0-py38h06a4308_1003
  conda                                4.9.2-py38h06a4308_0 --> 4.10.1-py38h06a4308_1
  conda-package-han~                   1.7.2-py38h03888b9_0 --> 1.7.3-py38h27cfd23_1
  cryptography                         3.2.1-py38h3c74f83_1 --> 3.4.7-py38hd23ed53_0
  openssl                                 1.1.1h-h7b6447c_0 --> 1.1.1k-h27cfd23_0
  pip                                 20.2.4-py38h06a4308_0 --> 21.0.1-py38h06a4308_0
  pyopenssl                             19.1.0-pyhd3eb1b0_1 --> 20.0.1-pyhd3eb1b0_1
  readline                                   8.0-h7b6447c_0 --> 8.1-h27cfd23_0
  requests                                      2.24.0-py_0 --> 2.25.1-pyhd3eb1b0_0
  ruamel_yaml                        0.15.87-py38h7b6447c_1 --> 0.15.100-py38h27cfd23_0
  setuptools                          50.3.1-py38h06a4308_1 --> 52.0.0-py38h06a4308_0
  sqlite                                  3.33.0-h62c20be_0 --> 3.35.4-hdfb4753_0
  tqdm                                  4.51.0-pyhd3eb1b0_0 --> 4.59.0-pyhd3eb1b0_1
  urllib3                                      1.25.11-py_0 --> 1.26.4-pyhd3eb1b0_0
  wheel                                 0.35.1-pyhd3eb1b0_0 --> 0.36.2-pyhd3eb1b0_0

The following packages will be DOWNGRADED:

  idna                                            2.10-py_0 --> 2.10-pyhd3eb1b0_0



Downloading and Extracting Packages

openssl-1.1.1k       | 2.5 MB    |            |   0% 
openssl-1.1.1k       | 2.5 MB    |            |   1% 
openssl-1.1.1k       | 2.5 MB    | ###        |  31% 
openssl-1.1.1k       | 2.5 MB    | ########## | 100% 
openssl-1.1.1k       | 2.5 MB    | ########## | 100% 

ca-certificates-2021 | 114 KB    |            |   0% 
ca-certificates-2021 | 114 KB    | ########## | 100% 

tqdm-4.59.0          | 93 KB     |            |   0% 
tqdm-4.59.0          | 93 KB     | ########## | 100% 

wheel-0.36.2         | 33 KB     |            |   0% 
wheel-0.36.2         | 33 KB     | ########## | 100% 

idna-2.10            | 52 KB     |            |   0% 
idna-2.10            | 52 KB     | ########## | 100% 

urllib3-1.26.4       | 105 KB    |            |   0% 
urllib3-1.26.4       | 105 KB    | ########## | 100% 

setuptools-52.0.0    | 714 KB    |            |   0% 
setuptools-52.0.0    | 714 KB    | ########## | 100% 
setuptools-52.0.0    | 714 KB    | ########## | 100% 

conda-4.10.1         | 2.9 MB    |            |   0% 
conda-4.10.1         | 2.9 MB    | ####6      |  47% 
conda-4.10.1         | 2.9 MB    | ########## | 100% 
conda-4.10.1         | 2.9 MB    | ########## | 100% 

requests-2.25.1      | 52 KB     |            |   0% 
requests-2.25.1      | 52 KB     | ########## | 100% 

sqlite-3.35.4        | 981 KB    |            |   0% 
sqlite-3.35.4        | 981 KB    | ########## | 100% 
sqlite-3.35.4        | 981 KB    | ########## | 100% 

cffi-1.14.5          | 224 KB    |            |   0% 
cffi-1.14.5          | 224 KB    | ########## | 100% 
cffi-1.14.5          | 224 KB    | ########## | 100% 

readline-8.1         | 362 KB    |            |   0% 
readline-8.1         | 362 KB    | ########## | 100% 

ruamel_yaml-0.15.100 | 258 KB    |            |   0% 
ruamel_yaml-0.15.100 | 258 KB    | ########## | 100% 

chardet-4.0.0        | 194 KB    |            |   0% 
chardet-4.0.0        | 194 KB    | ########## | 100% 

certifi-2020.12.5    | 141 KB    |            |   0% 
certifi-2020.12.5    | 141 KB    | ########## | 100% 

conda-package-handli | 884 KB    |            |   0% 
conda-package-handli | 884 KB    | ########## | 100% 
conda-package-handli | 884 KB    | ########## | 100% 

pyopenssl-20.0.1     | 49 KB     |            |   0% 
pyopenssl-20.0.1     | 49 KB     | ########## | 100% 

pip-21.0.1           | 1.8 MB    |            |   0% 
pip-21.0.1           | 1.8 MB    | #########1 |  92% 
pip-21.0.1           | 1.8 MB    | ########## | 100% 

cryptography-3.4.7   | 913 KB    |            |   0% 
cryptography-3.4.7   | 913 KB    | ########## | 100% 
cryptography-3.4.7   | 913 KB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/RtmpvKKYVT/Test/envs/r-reticulate

  added / updated specs:
    - numpy
    - python=3.6


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
    _openmp_mutex-4.5          |            1_gnu          22 KB  conda-forge
    ca-certificates-2020.12.5  |       ha878542_0         137 KB  conda-forge
    certifi-2020.12.5          |   py36h5fab9bb_1         143 KB  conda-forge
    ld_impl_linux-64-2.35.1    |       hea4e1c9_2         618 KB  conda-forge
    libblas-3.9.0              |       9_openblas          11 KB  conda-forge
    libcblas-3.9.0             |       9_openblas          11 KB  conda-forge
    libffi-3.3                 |       h58526e2_2          51 KB  conda-forge
    libgcc-ng-9.3.0            |      h2828fa1_19         7.8 MB  conda-forge
    libgfortran-ng-9.3.0       |      hff62375_19          22 KB  conda-forge
    libgfortran5-9.3.0         |      hff62375_19         2.0 MB  conda-forge
    libgomp-9.3.0              |      h2828fa1_19         376 KB  conda-forge
    liblapack-3.9.0            |       9_openblas          11 KB  conda-forge
    libopenblas-0.3.15         |pthreads_h8fe5266_0         9.2 MB  conda-forge
    libstdcxx-ng-9.3.0         |      h6de172a_19         4.0 MB  conda-forge
    ncurses-6.2                |       h58526e2_4         985 KB  conda-forge
    numpy-1.19.5               |   py36h2aa4a07_1         5.3 MB  conda-forge
    openssl-1.1.1k             |       h7f98852_0         2.1 MB  conda-forge
    pip-21.1.1                 |     pyhd8ed1ab_0         1.1 MB  conda-forge
    python-3.6.13              |hffdb5ce_0_cpython        38.4 MB  conda-forge
    python_abi-3.6             |          1_cp36m           4 KB  conda-forge
    readline-8.1               |       h46c0cb4_0         295 KB  conda-forge
    setuptools-49.6.0          |   py36h5fab9bb_3         936 KB  conda-forge
    sqlite-3.35.5              |       h74cdb3f_0         1.4 MB  conda-forge
    tk-8.6.10                  |       h21135ba_1         3.2 MB  conda-forge
    wheel-0.36.2               |     pyhd3deb0d_0          31 KB  conda-forge
    xz-5.2.5                   |       h516909a_1         343 KB  conda-forge
    zlib-1.2.11                |    h516909a_1010         106 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        78.5 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
  ca-certificates    conda-forge/linux-64::ca-certificates-2020.12.5-ha878542_0
  certifi            conda-forge/linux-64::certifi-2020.12.5-py36h5fab9bb_1
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.35.1-hea4e1c9_2
  libblas            conda-forge/linux-64::libblas-3.9.0-9_openblas
  libcblas           conda-forge/linux-64::libcblas-3.9.0-9_openblas
  libffi             conda-forge/linux-64::libffi-3.3-h58526e2_2
  libgcc-ng          conda-forge/linux-64::libgcc-ng-9.3.0-h2828fa1_19
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-9.3.0-hff62375_19
  libgfortran5       conda-forge/linux-64::libgfortran5-9.3.0-hff62375_19
  libgomp            conda-forge/linux-64::libgomp-9.3.0-h2828fa1_19
  liblapack          conda-forge/linux-64::liblapack-3.9.0-9_openblas
  libopenblas        conda-forge/linux-64::libopenblas-0.3.15-pthreads_h8fe5266_0
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-9.3.0-h6de172a_19
  ncurses            conda-forge/linux-64::ncurses-6.2-h58526e2_4
  numpy              conda-forge/linux-64::numpy-1.19.5-py36h2aa4a07_1
  openssl            conda-forge/linux-64::openssl-1.1.1k-h7f98852_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             conda-forge/linux-64::python-3.6.13-hffdb5ce_0_cpython
  python_abi         conda-forge/linux-64::python_abi-3.6-1_cp36m
  readline           conda-forge/linux-64::readline-8.1-h46c0cb4_0
  setuptools         conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3
  sqlite             conda-forge/linux-64::sqlite-3.35.5-h74cdb3f_0
  tk                 conda-forge/linux-64::tk-8.6.10-h21135ba_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/linux-64::xz-5.2.5-h516909a_1
  zlib               conda-forge/linux-64::zlib-1.2.11-h516909a_1010



Downloading and Extracting Packages

_libgcc_mutex-0.1    | 3 KB      |            |   0% 
_libgcc_mutex-0.1    | 3 KB      | ########## | 100% 
_libgcc_mutex-0.1    | 3 KB      | ########## | 100% 

libgfortran-ng-9.3.0 | 22 KB     |            |   0% 
libgfortran-ng-9.3.0 | 22 KB     | ########## | 100% 

sqlite-3.35.5        | 1.4 MB    |            |   0% 
sqlite-3.35.5        | 1.4 MB    | #5         |  15% 
sqlite-3.35.5        | 1.4 MB    | ########## | 100% 
sqlite-3.35.5        | 1.4 MB    | ########## | 100% 

libgcc-ng-9.3.0      | 7.8 MB    |            |   0% 
libgcc-ng-9.3.0      | 7.8 MB    | ##3        |  23% 
libgcc-ng-9.3.0      | 7.8 MB    | #########7 |  97% 
libgcc-ng-9.3.0      | 7.8 MB    | ########## | 100% 

_openmp_mutex-4.5    | 22 KB     |            |   0% 
_openmp_mutex-4.5    | 22 KB     | ########## | 100% 

ca-certificates-2020 | 137 KB    |            |   0% 
ca-certificates-2020 | 137 KB    | ########## | 100% 

libffi-3.3           | 51 KB     |            |   0% 
libffi-3.3           | 51 KB     | ########## | 100% 

numpy-1.19.5         | 5.3 MB    |            |   0% 
numpy-1.19.5         | 5.3 MB    | ####3      |  43% 
numpy-1.19.5         | 5.3 MB    | ########## | 100% 
numpy-1.19.5         | 5.3 MB    | ########## | 100% 

libcblas-3.9.0       | 11 KB     |            |   0% 
libcblas-3.9.0       | 11 KB     | ########## | 100% 

libopenblas-0.3.15   | 9.2 MB    |            |   0% 
libopenblas-0.3.15   | 9.2 MB    | ##1        |  21% 
libopenblas-0.3.15   | 9.2 MB    | ########3  |  84% 
libopenblas-0.3.15   | 9.2 MB    | ########## | 100% 

openssl-1.1.1k       | 2.1 MB    |            |   0% 
openssl-1.1.1k       | 2.1 MB    | ########1  |  82% 
openssl-1.1.1k       | 2.1 MB    | ########## | 100% 

libgomp-9.3.0        | 376 KB    |            |   0% 
libgomp-9.3.0        | 376 KB    | ########## | 100% 
libgomp-9.3.0        | 376 KB    | ########## | 100% 

tk-8.6.10            | 3.2 MB    |            |   0% 
tk-8.6.10            | 3.2 MB    | ######4    |  65% 
tk-8.6.10            | 3.2 MB    | ########## | 100% 
tk-8.6.10            | 3.2 MB    | ########## | 100% 

python_abi-3.6       | 4 KB      |            |   0% 
python_abi-3.6       | 4 KB      | ########## | 100% 

setuptools-49.6.0    | 936 KB    |            |   0% 
setuptools-49.6.0    | 936 KB    | ########## | 100% 
setuptools-49.6.0    | 936 KB    | ########## | 100% 

wheel-0.36.2         | 31 KB     |            |   0% 
wheel-0.36.2         | 31 KB     | ########## | 100% 

libstdcxx-ng-9.3.0   | 4.0 MB    |            |   0% 
libstdcxx-ng-9.3.0   | 4.0 MB    | #####2     |  52% 
libstdcxx-ng-9.3.0   | 4.0 MB    | ########## | 100% 
libstdcxx-ng-9.3.0   | 4.0 MB    | ########## | 100% 

ncurses-6.2          | 985 KB    |            |   0% 
ncurses-6.2          | 985 KB    | ########## | 100% 
ncurses-6.2          | 985 KB    | ########## | 100% 

readline-8.1         | 295 KB    |            |   0% 
readline-8.1         | 295 KB    | ########## | 100% 
readline-8.1         | 295 KB    | ########## | 100% 

libblas-3.9.0        | 11 KB     |            |   0% 
libblas-3.9.0        | 11 KB     | ########## | 100% 

ld_impl_linux-64-2.3 | 618 KB    |            |   0% 
ld_impl_linux-64-2.3 | 618 KB    | ########## | 100% 
ld_impl_linux-64-2.3 | 618 KB    | ########## | 100% 

certifi-2020.12.5    | 143 KB    |            |   0% 
certifi-2020.12.5    | 143 KB    | ########## | 100% 

pip-21.1.1           | 1.1 MB    |            |   0% 
pip-21.1.1           | 1.1 MB    | ########## | 100% 
pip-21.1.1           | 1.1 MB    | ########## | 100% 

libgfortran5-9.3.0   | 2.0 MB    |            |   0% 
libgfortran5-9.3.0   | 2.0 MB    | ########6  |  86% 
libgfortran5-9.3.0   | 2.0 MB    | ########## | 100% 

zlib-1.2.11          | 106 KB    |            |   0% 
zlib-1.2.11          | 106 KB    | ########## | 100% 

liblapack-3.9.0      | 11 KB     |            |   0% 
liblapack-3.9.0      | 11 KB     | ########## | 100% 

xz-5.2.5             | 343 KB    |            |   0% 
xz-5.2.5             | 343 KB    | ########## | 100% 
xz-5.2.5             | 343 KB    | ########## | 100% 

python-3.6.13        | 38.4 MB   |            |   0% 
python-3.6.13        | 38.4 MB   | 4          |   5% 
python-3.6.13        | 38.4 MB   | ##         |  21% 
python-3.6.13        | 38.4 MB   | ###8       |  39% 
python-3.6.13        | 38.4 MB   | #####8     |  58% 
python-3.6.13        | 38.4 MB   | ########   |  80% 
python-3.6.13        | 38.4 MB   | ########## | 100% 
python-3.6.13        | 38.4 MB   | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate r-reticulate
#
# To deactivate an active environment, use
#
#     $ conda deactivate

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 3 ]
> 
> proc.time()
   user  system elapsed 
172.768  15.532 194.618

name	user	system	elapsed
ListCondaEnvironments	214.828	12.572	251.307
ListCondaPackages	11.660	0.840	13.411
SaveEnvironments	16.276	1.004	20.190
UseEnvironments	167.252	3.780	174.929
install_CondaSysReqs	125.896	6.868	135.812
install_CondaTools	32.980	3.244	37.239
search_conda	10.380	0.780	11.026

CHECK report for Herper on malbec1

Summary

Command output

Installation output

Tests output

Example timings