Back to Build/check report for BioC 3.11 experimental data

CHECK report for geneLenDataBase on malbec2

This page was generated on 2020-10-15 20:45:47 -0400 (Thu, 15 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE geneLenDataBase PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 137/391HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.24.0
Matthew Young , Nadia Davidson
Snapshot Date: 2020-10-15 07:30:17 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: RELEASE_3_11
Last Commit: 8795d00
Last Changed Date: 2020-04-27 15:03:23 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.24.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings geneLenDataBase_1.24.0.tar.gz
StartedAt: 2020-10-15 13:25:13 -0400 (Thu, 15 Oct 2020)
EndedAt: 2020-10-15 13:37:05 -0400 (Thu, 15 Oct 2020)
EllapsedTime: 712.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings geneLenDataBase_1.24.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
supportedGeneIDs 0.318  0.004  12.405
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.11-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0940.0050.097
anoCar1.genscan.LENGTH0.0780.0360.114
anoCar1.xenoRefGene.LENGTH1.4240.0041.428
anoGam1.ensGene.LENGTH0.1330.0160.148
anoGam1.geneid.LENGTH0.1030.0280.131
anoGam1.genscan.LENGTH0.0880.0200.108
apiMel1.genscan.LENGTH0.0550.0360.091
apiMel2.ensGene.LENGTH0.1440.0080.152
apiMel2.geneid.LENGTH0.1740.0360.209
apiMel2.genscan.LENGTH0.0900.0240.115
aplCal1.xenoRefGene.LENGTH0.5550.0000.556
bosTau2.geneSymbol.LENGTH0.0810.0360.117
bosTau2.geneid.LENGTH0.3060.0040.310
bosTau2.genscan.LENGTH0.1280.0160.143
bosTau2.refGene.LENGTH0.0880.0200.108
bosTau2.sgpGene.LENGTH0.1120.0040.116
bosTau3.ensGene.LENGTH0.1620.0280.189
bosTau3.geneSymbol.LENGTH0.10.00.1
bosTau3.geneid.LENGTH0.1460.0080.155
bosTau3.genscan.LENGTH0.0960.0120.108
bosTau3.refGene.LENGTH0.0710.0200.091
bosTau3.sgpGene.LENGTH0.1610.0160.177
bosTau4.ensGene.LENGTH0.1390.0200.160
bosTau4.geneSymbol.LENGTH0.0730.0120.084
bosTau4.genscan.LENGTH0.0880.0000.087
bosTau4.nscanGene.LENGTH0.060.020.08
bosTau4.refGene.LENGTH0.0630.0200.082
braFlo1.xenoRefGene.LENGTH0.4590.0120.471
caeJap1.xenoRefGene.LENGTH0.3460.0000.346
caePb1.xenoRefGene.LENGTH0.4430.0000.443
caePb2.xenoRefGene.LENGTH0.4620.0000.462
caeRem2.xenoRefGene.LENGTH0.3780.0000.377
caeRem3.xenoRefGene.LENGTH0.3140.0000.314
calJac1.genscan.LENGTH0.1290.0240.152
calJac1.nscanGene.LENGTH0.0980.0000.098
calJac1.xenoRefGene.LENGTH0.7290.0000.729
canFam1.ensGene.LENGTH0.1070.0040.111
canFam1.geneSymbol.LENGTH0.0030.0080.010
canFam1.genscan.LENGTH0.0730.0000.073
canFam1.nscanGene.LENGTH0.0610.0040.066
canFam1.refGene.LENGTH0.0100.0000.011
canFam1.xenoRefGene.LENGTH0.7370.0000.737
canFam2.ensGene.LENGTH0.1470.0160.163
canFam2.geneSymbol.LENGTH0.010.000.01
canFam2.genscan.LENGTH0.0650.0000.065
canFam2.nscanGene.LENGTH0.0670.0080.074
canFam2.refGene.LENGTH0.0060.0040.010
canFam2.xenoRefGene.LENGTH0.6450.0000.646
cavPor3.ensGene.LENGTH0.1250.0280.152
cavPor3.genscan.LENGTH0.1360.0000.135
cavPor3.nscanGene.LENGTH0.0910.0200.110
cavPor3.xenoRefGene.LENGTH0.7120.0000.712
cb1.xenoRefGene.LENGTH0.5460.0000.546
cb3.xenoRefGene.LENGTH0.3180.0000.318
ce2.geneSymbol.LENGTH0.1200.0640.184
ce2.geneid.LENGTH0.0530.0000.053
ce2.refGene.LENGTH0.1150.0600.174
ce4.geneSymbol.LENGTH0.1280.0480.176
ce4.refGene.LENGTH0.1390.0360.174
ce4.xenoRefGene.LENGTH0.0720.0000.072
ce6.ensGene.LENGTH0.1120.0080.119
ce6.geneSymbol.LENGTH0.1380.0440.182
ce6.refGene.LENGTH0.1350.0440.179
ce6.xenoRefGene.LENGTH0.0750.0000.075
ci1.geneSymbol.LENGTH0.0090.0000.010
ci1.refGene.LENGTH0.0050.0040.009
ci1.xenoRefGene.LENGTH0.1700.0000.169
ci2.ensGene.LENGTH0.0700.0000.069
ci2.geneSymbol.LENGTH0.0050.0040.009
ci2.refGene.LENGTH0.0040.0040.009
ci2.xenoRefGene.LENGTH0.2570.0000.257
danRer3.ensGene.LENGTH0.1420.0240.166
danRer3.geneSymbol.LENGTH0.1040.0240.128
danRer3.refGene.LENGTH0.1620.0280.190
danRer4.ensGene.LENGTH0.1530.0000.153
danRer4.geneSymbol.LENGTH0.0840.0400.125
danRer4.genscan.LENGTH0.0640.0080.073
danRer4.nscanGene.LENGTH0.1230.0240.147
danRer4.refGene.LENGTH0.1040.0320.136
danRer5.ensGene.LENGTH0.110.000.11
danRer5.geneSymbol.LENGTH0.0980.0240.122
danRer5.refGene.LENGTH0.0920.0240.117
danRer5.vegaGene.LENGTH0.0850.0240.110
danRer5.vegaPseudoGene.LENGTH0.0030.0000.004
danRer6.ensGene.LENGTH0.1620.0280.190
danRer6.geneSymbol.LENGTH0.1060.0160.122
danRer6.refGene.LENGTH0.0680.0480.115
danRer6.xenoRefGene.LENGTH0.5920.0000.592
dm1.geneSymbol.LENGTH0.1120.0480.159
dm1.genscan.LENGTH0.0440.0160.060
dm1.refGene.LENGTH0.1110.0440.155
dm2.geneSymbol.LENGTH0.1360.0360.172
dm2.geneid.LENGTH0.0890.0160.105
dm2.genscan.LENGTH0.1410.0160.157
dm2.nscanGene.LENGTH0.050.000.05
dm2.refGene.LENGTH0.1060.0640.170
dm3.geneSymbol.LENGTH0.0710.0000.070
dm3.nscanPasaGene.LENGTH0.0840.0520.236
dm3.refGene.LENGTH0.0730.0000.073
dp2.genscan.LENGTH0.0510.0200.071
dp2.xenoRefGene.LENGTH0.2000.0040.204
dp3.geneid.LENGTH0.0770.0320.109
dp3.genscan.LENGTH0.0500.0160.066
dp3.xenoRefGene.LENGTH0.1900.0160.206
droAna1.geneid.LENGTH0.0810.0040.084
droAna1.genscan.LENGTH0.0220.0000.022
droAna1.xenoRefGene.LENGTH0.2230.0120.235
droAna2.genscan.LENGTH0.0520.0000.052
droAna2.xenoRefGene.LENGTH0.2910.0160.307
droEre1.genscan.LENGTH0.0520.0160.068
droEre1.xenoRefGene.LENGTH0.3160.0040.321
droGri1.genscan.LENGTH0.1810.0200.200
droGri1.xenoRefGene.LENGTH0.3740.0000.374
droMoj1.geneid.LENGTH0.1480.0160.164
droMoj1.genscan.LENGTH0.0510.0000.051
droMoj1.xenoRefGene.LENGTH0.2330.0120.245
droMoj2.genscan.LENGTH0.0700.0160.086
droMoj2.xenoRefGene.LENGTH0.320.000.32
droPer1.genscan.LENGTH0.0720.0280.100
droPer1.xenoRefGene.LENGTH0.3060.0120.318
droSec1.genscan.LENGTH0.0580.0200.078
droSec1.xenoRefGene.LENGTH0.5380.0000.538
droSim1.geneid.LENGTH0.0810.0320.113
droSim1.genscan.LENGTH0.0490.0160.064
droSim1.xenoRefGene.LENGTH0.2580.0000.258
droVir1.geneid.LENGTH0.1080.0200.128
droVir1.genscan.LENGTH0.0840.0200.104
droVir1.xenoRefGene.LENGTH0.2660.0000.266
droVir2.genscan.LENGTH0.0720.0120.084
droVir2.xenoRefGene.LENGTH0.2820.0080.290
droYak1.geneid.LENGTH0.0840.0360.120
droYak1.genscan.LENGTH0.0660.0080.074
droYak1.xenoRefGene.LENGTH0.1950.0010.196
droYak2.genscan.LENGTH0.0690.0070.075
droYak2.xenoRefGene.LENGTH0.2820.0040.286
equCab1.geneSymbol.LENGTH0.0020.0080.010
equCab1.geneid.LENGTH0.1040.0320.136
equCab1.nscanGene.LENGTH0.8030.0400.843
equCab1.refGene.LENGTH0.0050.0040.009
equCab1.sgpGene.LENGTH0.0860.0040.090
equCab2.ensGene.LENGTH0.1420.0120.154
equCab2.geneSymbol.LENGTH0.0160.0000.016
equCab2.nscanGene.LENGTH0.1150.0520.167
equCab2.refGene.LENGTH0.0070.0080.014
equCab2.xenoRefGene.LENGTH0.5510.0000.551
felCat3.ensGene.LENGTH0.090.000.09
felCat3.geneSymbol.LENGTH0.0060.0000.006
felCat3.geneid.LENGTH0.4750.0000.475
felCat3.genscan.LENGTH0.1290.0160.144
felCat3.nscanGene.LENGTH0.1180.0280.146
felCat3.refGene.LENGTH0.0070.0000.007
felCat3.sgpGene.LENGTH0.1370.0040.141
felCat3.xenoRefGene.LENGTH1.2940.0041.297
fr1.ensGene.LENGTH0.1280.0070.136
fr1.genscan.LENGTH0.0610.0040.065
fr2.ensGene.LENGTH0.1840.0200.203
galGal2.ensGene.LENGTH0.0610.0000.061
galGal2.geneSymbol.LENGTH0.0290.0120.041
galGal2.geneid.LENGTH0.0620.0400.102
galGal2.genscan.LENGTH0.1050.0280.133
galGal2.refGene.LENGTH0.0190.0200.039
galGal2.sgpGene.LENGTH0.0970.0400.137
galGal3.ensGene.LENGTH0.0930.0070.101
galGal3.geneSymbol.LENGTH0.0280.0120.040
galGal3.genscan.LENGTH0.0900.0360.126
galGal3.nscanGene.LENGTH0.0740.0000.074
galGal3.refGene.LENGTH0.0290.0080.037
galGal3.xenoRefGene.LENGTH0.6590.0000.659
gasAcu1.ensGene.LENGTH0.1290.0320.161
gasAcu1.nscanGene.LENGTH0.1590.0160.175
hg16.acembly.LENGTH0.550.000.55
hg16.ensGene.LENGTH0.0970.0040.101
hg16.exoniphy.LENGTH0.2270.0000.227
hg16.geneSymbol.LENGTH0.1030.0120.115
hg16.geneid.LENGTH0.0850.0400.125
hg16.genscan.LENGTH0.0840.0000.084
hg16.knownGene.LENGTH0.1570.0080.166
hg16.refGene.LENGTH0.0960.0080.104
hg16.sgpGene.LENGTH0.0580.0080.066
hg17.acembly.LENGTH0.7170.0050.722
hg17.acescan.LENGTH0.0120.0100.022
hg17.ccdsGene.LENGTH0.0460.0160.062
hg17.ensGene.LENGTH0.2250.0280.252
hg17.exoniphy.LENGTH0.6460.0000.647
hg17.geneSymbol.LENGTH0.1240.0040.128
hg17.geneid.LENGTH0.0880.0200.108
hg17.genscan.LENGTH0.0740.0080.082
hg17.knownGene.LENGTH0.1210.0240.145
hg17.refGene.LENGTH0.1430.0160.159
hg17.sgpGene.LENGTH0.1480.0040.152
hg17.vegaGene.LENGTH0.0730.0230.098
hg17.vegaPseudoGene.LENGTH0.0390.0000.040
hg17.xenoRefGene.LENGTH0.2120.0040.216
hg18.acembly.LENGTH0.9940.0040.998
hg18.acescan.LENGTH0.0190.0040.023
hg18.ccdsGene.LENGTH0.0430.0400.082
hg18.ensGene.LENGTH0.2030.0120.215
hg18.exoniphy.LENGTH0.4550.0000.455
hg18.geneSymbol.LENGTH0.1090.0160.125
hg18.geneid.LENGTH0.0990.0160.114
hg18.genscan.LENGTH0.1050.0000.105
hg18.knownGene.LENGTH0.2260.0120.238
hg18.knownGeneOld3.LENGTH0.1220.0120.135
hg18.refGene.LENGTH0.1490.0000.150
hg18.sgpGene.LENGTH0.1140.0240.138
hg18.sibGene.LENGTH1.3360.0001.337
hg18.xenoRefGene.LENGTH0.4370.0080.446
hg19.ccdsGene.LENGTH0.0820.0120.094
hg19.ensGene.LENGTH0.3010.0120.312
hg19.exoniphy.LENGTH0.4160.0000.415
hg19.geneSymbol.LENGTH0.1470.0040.151
hg19.knownGene.LENGTH0.2210.0400.261
hg19.nscanGene.LENGTH0.1420.0040.145
hg19.refGene.LENGTH0.1090.0080.116
hg19.xenoRefGene.LENGTH0.3180.0000.317
loxAfr3.xenoRefGene.LENGTH0.7680.0000.767
mm7.ensGene.LENGTH0.1030.0000.102
mm7.geneSymbol.LENGTH0.0830.0010.084
mm7.geneid.LENGTH0.0990.0190.117
mm7.genscan.LENGTH0.0660.0040.070
mm7.knownGene.LENGTH0.0860.0000.086
mm7.refGene.LENGTH0.0690.0030.073
mm7.sgpGene.LENGTH0.0910.0190.111
mm7.xenoRefGene.LENGTH0.2640.0040.268
mm8.ccdsGene.LENGTH0.0390.0120.050
mm8.ensGene.LENGTH0.0890.0080.097
mm8.geneSymbol.LENGTH0.0710.0040.075
mm8.geneid.LENGTH0.0910.0200.111
mm8.genscan.LENGTH0.0630.0000.063
mm8.knownGene.LENGTH0.0950.0000.095
mm8.nscanGene.LENGTH0.0620.0000.061
mm8.refGene.LENGTH0.0780.0000.077
mm8.sgpGene.LENGTH0.1020.0160.119
mm8.sibGene.LENGTH0.2610.0000.261
mm8.xenoRefGene.LENGTH0.4090.0240.432
mm9.acembly.LENGTH0.3040.0040.308
mm9.ccdsGene.LENGTH0.0620.0080.070
mm9.ensGene.LENGTH0.1900.0270.219
mm9.exoniphy.LENGTH0.4290.0000.429
mm9.geneSymbol.LENGTH0.1000.0000.101
mm9.geneid.LENGTH0.1150.0240.140
mm9.genscan.LENGTH0.0690.0040.073
mm9.knownGene.LENGTH0.1700.0280.198
mm9.nscanGene.LENGTH0.0650.0000.065
mm9.refGene.LENGTH0.0850.0000.085
mm9.sgpGene.LENGTH0.1050.0280.134
mm9.xenoRefGene.LENGTH0.4120.0120.425
monDom1.genscan.LENGTH0.3600.0080.369
monDom4.ensGene.LENGTH0.1020.0080.110
monDom4.geneSymbol.LENGTH0.0020.0040.006
monDom4.genscan.LENGTH0.1030.0390.143
monDom4.nscanGene.LENGTH0.1180.0600.178
monDom4.refGene.LENGTH0.0050.0000.006
monDom4.xenoRefGene.LENGTH0.3870.0000.387
monDom5.ensGene.LENGTH0.1210.0000.121
monDom5.geneSymbol.LENGTH0.0050.0000.006
monDom5.genscan.LENGTH0.0560.0000.056
monDom5.nscanGene.LENGTH0.1180.0000.118
monDom5.refGene.LENGTH0.0010.0040.005
monDom5.xenoRefGene.LENGTH0.6610.0000.661
ornAna1.ensGene.LENGTH0.1400.0320.171
ornAna1.geneSymbol.LENGTH0.0030.0000.003
ornAna1.refGene.LENGTH0.0020.0000.003
ornAna1.xenoRefGene.LENGTH0.6510.0000.651
oryLat2.ensGene.LENGTH0.1000.0240.123
oryLat2.geneSymbol.LENGTH0.0000.0060.006
oryLat2.refGene.LENGTH0.0060.0010.006
oryLat2.xenoRefGene.LENGTH0.5480.0040.552
panTro1.ensGene.LENGTH0.1250.0040.128
panTro1.geneid.LENGTH0.0880.0400.128
panTro1.genscan.LENGTH0.0650.0040.068
panTro1.xenoRefGene.LENGTH0.1800.0030.185
panTro2.ensGene.LENGTH0.1530.0040.158
panTro2.geneSymbol.LENGTH0.1110.0120.123
panTro2.genscan.LENGTH0.0670.0000.067
panTro2.nscanGene.LENGTH0.0580.0080.065
panTro2.refGene.LENGTH0.1110.0120.122
panTro2.xenoRefGene.LENGTH0.5580.0000.558
petMar1.xenoRefGene.LENGTH0.3310.0320.362
ponAbe2.ensGene.LENGTH0.1350.0120.147
ponAbe2.geneSymbol.LENGTH0.0250.0040.028
ponAbe2.genscan.LENGTH0.0640.0000.064
ponAbe2.nscanGene.LENGTH0.0650.0000.066
ponAbe2.refGene.LENGTH0.0200.0080.029
ponAbe2.xenoRefGene.LENGTH0.7400.0030.744
priPac1.xenoRefGene.LENGTH0.4380.0000.439
rheMac2.ensGene.LENGTH0.3790.0200.399
rheMac2.geneSymbol.LENGTH0.0090.0000.010
rheMac2.geneid.LENGTH0.0880.0080.097
rheMac2.nscanGene.LENGTH0.0580.0040.062
rheMac2.refGene.LENGTH0.010.000.01
rheMac2.sgpGene.LENGTH0.0890.0070.098
rheMac2.xenoRefGene.LENGTH0.4760.0000.476
rn3.ensGene.LENGTH0.1580.0280.186
rn3.geneSymbol.LENGTH0.0980.0440.141
rn3.geneid.LENGTH0.0560.0000.057
rn3.genscan.LENGTH0.0760.0040.080
rn3.knownGene.LENGTH0.0510.0120.062
rn3.nscanGene.LENGTH0.0540.0040.059
rn3.refGene.LENGTH0.1220.0080.130
rn3.sgpGene.LENGTH0.0710.0000.070
rn3.xenoRefGene.LENGTH0.560.000.56
rn4.ensGene.LENGTH0.1490.0080.157
rn4.geneSymbol.LENGTH0.0970.0280.125
rn4.geneid.LENGTH0.1160.0240.141
rn4.genscan.LENGTH0.0630.0120.075
rn4.knownGene.LENGTH0.0460.0160.061
rn4.nscanGene.LENGTH0.1280.0320.159
rn4.refGene.LENGTH0.0920.0360.128
rn4.sgpGene.LENGTH0.1290.0040.133
rn4.xenoRefGene.LENGTH0.3760.0000.377
sacCer1.ensGene.LENGTH0.0490.0080.058
sacCer2.ensGene.LENGTH0.0450.0080.053
strPur1.geneSymbol.LENGTH0.0090.0000.008
strPur1.genscan.LENGTH0.0630.0000.062
strPur1.refGene.LENGTH0.0080.0000.009
strPur1.xenoRefGene.LENGTH0.5200.0000.521
strPur2.geneSymbol.LENGTH0.0070.0000.007
strPur2.genscan.LENGTH0.1150.0040.119
strPur2.refGene.LENGTH0.0070.0000.007
strPur2.xenoRefGene.LENGTH0.6190.0040.622
supportedGeneIDs 0.318 0.00412.405
supportedGenomes0.1950.0032.104
taeGut1.ensGene.LENGTH0.0670.0040.071
taeGut1.geneSymbol.LENGTH0.0040.0000.003
taeGut1.genscan.LENGTH0.0730.0120.085
taeGut1.nscanGene.LENGTH0.0620.0110.074
taeGut1.refGene.LENGTH0.0030.0000.004
taeGut1.xenoRefGene.LENGTH0.4680.0000.469
tetNig1.ensGene.LENGTH0.1440.0080.152
tetNig1.geneid.LENGTH0.0780.0160.094
tetNig1.genscan.LENGTH0.1110.0200.131
tetNig1.nscanGene.LENGTH0.0880.0080.096
tetNig2.ensGene.LENGTH0.0930.0080.100
unfactor0.0040.0000.004
xenTro1.genscan.LENGTH0.0840.0000.084
xenTro2.ensGene.LENGTH0.0950.0320.718
xenTro2.geneSymbol.LENGTH0.0830.0160.099
xenTro2.genscan.LENGTH0.1180.0110.130
xenTro2.refGene.LENGTH0.0610.0130.073