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INSTALL report for trio on tokay2

This page was generated on 2020-10-17 11:57:57 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE trio PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1835/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trio 3.26.0
Holger Schwender
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/trio
Branch: RELEASE_3_11
Last Commit: 884c6df
Last Changed Date: 2020-04-27 14:35:53 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: trio
Version: 3.26.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/trio_3.26.0.tar.gz && rm -rf trio.buildbin-libdir && mkdir trio.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trio.buildbin-libdir trio_3.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL trio_3.26.0.zip && rm trio_3.26.0.tar.gz trio_3.26.0.zip
StartedAt: 2020-10-16 17:05:47 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:06:57 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 70.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/trio_3.26.0.tar.gz && rm -rf trio.buildbin-libdir && mkdir trio.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trio.buildbin-libdir trio_3.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL trio_3.26.0.zip && rm trio_3.26.0.tar.gz trio_3.26.0.zip
###
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100  725k  100  725k    0     0  10.4M      0 --:--:-- --:--:-- --:--:-- 11.8M

install for i386

* installing *source* package 'trio' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'trio'
    finding HTML links ... done
    allelicTDT                              html  
    colEMlrt                                html  
    colGxE                                  html  
    colGxGPerms                             html  
    colPOlrt                                html  
    colTDTmaxTest                           html  
    colTDTsam                               html  
    findLDblocks                            html  
    getLD                                   html  
    getMatPseudo                            html  
    lrControl                               html  
    ped2geno                                html  
    plot.LDblocks                           html  
    plot.getLD                              html  
    plot.trioLR                             html  
    poly4root                               html  
    print.colGxE                            html  
    print.trioFS                            html  
    print.trioLR                            html  
    probTDT                                 html  
    read.pedfile                            html  
    removeSNPs                              html  
    scoreTDT                                html  
    tdt                                     html  
    tdtGxG                                  html  
    trio.check                              html  
    trio.data                               html  
    trio.permTest                           html  
    trio.power                              html  
    trio.prepare                            html  
    trio.sim                                html  
    trioFS                                  html  
    trioLR                                  html  
    vcf2geno                                html  
** building package indices
** installing vignettes
   'trio.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'trio' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trio' as trio_3.26.0.zip
* DONE (trio)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'trio' successfully unpacked and MD5 sums checked