Package: supraHex

Version: 1.25.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings supraHex_1.25.0.tar.gz

StartedAt: 2020-01-16 09:18:58 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 09:20:25 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 87.3 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings supraHex_1.25.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/supraHex.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.25.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL supraHex
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.229	0.028	0.258
sCompReorder	1.225	0.250	1.476
sDistance	0.133	0.010	0.144
sDmat	0.121	0.006	0.128
sDmatCluster	0.285	0.030	0.315
sDmatMinima	0.213	0.021	0.234
sHexDist	0.005	0.001	0.006
sHexGrid	0.003	0.000	0.004
sHexGridVariant	0.002	0.001	0.003
sHexPolygon	0.004	0.001	0.004
sInitial	0.004	0.001	0.004
sMapOverlay	0.345	0.055	0.400
sNeighAny	0.010	0.002	0.013
sNeighDirect	0.006	0.002	0.009
sTopology	0.023	0.010	0.035
sTrainBatch	0.051	0.005	0.056
sTrainSeq	0.528	0.071	0.602
sTrainology	0.003	0.001	0.003
sWriteData	0.178	0.015	0.192
visColoralpha	0.004	0.000	0.005
visColorbar	0.037	0.000	0.038
visColormap	0.004	0.001	0.004
visCompReorder	1.112	0.269	1.382
visDmatCluster	0.424	0.070	0.494
visDmatHeatmap	0.337	0.024	0.361
visHeatmap	0.142	0.003	0.146
visHeatmapAdv	0.817	0.010	0.834
visHexAnimate	0.002	0.000	0.002
visHexBarplot	0.572	0.118	0.691
visHexComp	0.192	0.019	0.212
visHexGrid	0.136	0.004	0.140
visHexMapping	1.747	0.252	1.999
visHexMulComp	1.112	0.144	1.258
visHexPattern	1.789	0.250	2.039
visKernels	0.018	0.014	0.032
visTreeBSclust	0.125	0.005	0.131
visTreeBootstrap	0.291	0.017	0.309
visVp	0.059	0.016	0.074