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INSTALL report for splicegear on tokay2

This page was generated on 2020-10-17 11:57:51 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE splicegear PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1716/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
splicegear 1.60.0
Laurent Gautier
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/splicegear
Branch: RELEASE_3_11
Last Commit: fb89af2
Last Changed Date: 2020-04-27 14:08:30 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: splicegear
Version: 1.60.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/splicegear_1.60.0.tar.gz && rm -rf splicegear.buildbin-libdir && mkdir splicegear.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splicegear.buildbin-libdir splicegear_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL splicegear_1.60.0.zip && rm splicegear_1.60.0.tar.gz splicegear_1.60.0.zip
StartedAt: 2020-10-16 17:23:26 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:24:20 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 53.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/splicegear_1.60.0.tar.gz && rm -rf splicegear.buildbin-libdir && mkdir splicegear.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splicegear.buildbin-libdir splicegear_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL splicegear_1.60.0.zip && rm splicegear_1.60.0.tar.gz splicegear_1.60.0.zip
###
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100 69143  100 69143    0     0  1048k      0 --:--:-- --:--:-- --:--:-- 1184k

install for i386

* installing *source* package 'splicegear' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'splicegear'
    finding HTML links ... done
    Probes-class                            html  
    SpliceExprSet-class                     html  
    SpliceSites-class                       html  
    SpliceSitesGenomic-class                html  
    as.data.frame.SpliceExprSet             html  
    barplot.SpliceSites                     html  
    buildSpliceSites                        html  
    getRelSignStrength                      html  
    grid.helpers                            html  
    grid.plot.SpliceSites                   html  
    isProbeOnSpliceSite                     html  
    matchprobes2Probes                      html  
    plot.SpliceExprSet                      html  
    plot.SpliceSites                        html  
    plot.SpliceSitesGenomic                 html  
    sort.SpliceExprSet                      html  
    spliceset                               html  
    split.SpliceSites                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'splicegear' is deprecated and will be removed from
  Bioconductor version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'splicegear' is deprecated and will be removed from
  Bioconductor version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'splicegear' ...
** testing if installed package can be loaded
Warning: Package 'splicegear' is deprecated and will be removed from
  Bioconductor version 3.12
* MD5 sums
packaged installation of 'splicegear' as splicegear_1.60.0.zip
* DONE (splicegear)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'splicegear' successfully unpacked and MD5 sums checked