David Clayton
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/snpStats |
| Branch: master |
| Last Commit: 18599d4 |
| Last Changed Date: 2019-10-29 13:34:48 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-01-16 13:31:11 -0500 (Thu, 16 Jan 2020).
| Package 1622/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| snpStats 1.37.0 David Clayton
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped |
| Package: snpStats |
| Version: 1.37.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data snpStats |
| StartedAt: 2020-01-15 20:06:00 -0500 (Wed, 15 Jan 2020) |
| EndedAt: 2020-01-15 20:07:45 -0500 (Wed, 15 Jan 2020) |
| EllapsedTime: 105.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data snpStats ### ############################################################################## ############################################################################## * checking for file ‘snpStats/DESCRIPTION’ ... OK * preparing ‘snpStats’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘Fst-vignette.Rnw’ using Sweave Loading required package: snpStats Loading required package: survival Loading required package: Matrix --- finished re-building ‘Fst-vignette.Rnw’ --- re-building ‘data-input-vignette.Rnw’ using Sweave --- finished re-building ‘data-input-vignette.Rnw’ --- re-building ‘differences.Rnw’ using Sweave --- finished re-building ‘differences.Rnw’ --- re-building ‘imputation-vignette.Rnw’ using Sweave Error: processing vignette 'imputation-vignette.Rnw' failed with diagnostics: chunk 22 (label = mach) Error in read.mach(path) : Number of fields, 179, is not a multiple of the number of lines, 71 --- failed re-building ‘imputation-vignette.Rnw’ --- re-building ‘ld-vignette.Rnw’ using Sweave --- finished re-building ‘ld-vignette.Rnw’ --- re-building ‘pca-vignette.Rnw’ using Sweave --- finished re-building ‘pca-vignette.Rnw’ --- re-building ‘snpStats-vignette.Rnw’ using Sweave --- finished re-building ‘snpStats-vignette.Rnw’ --- re-building ‘tdt-vignette.Rnw’ using Sweave Warning in tdt.snp(data = pedData, snp.data = genotypes) : 211 misinheritances were detected --- finished re-building ‘tdt-vignette.Rnw’ SUMMARY: processing the following file failed: ‘imputation-vignette.Rnw’ Error: Vignette re-building failed. Execution halted