Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

BUILD BIN report for simulatorZ on machv2

This page was generated on 2020-10-14 11:58:12 -0400 (Wed, 14 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE simulatorZ PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1669/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simulatorZ 1.22.0
Yuqing Zhang
Snapshot Date: 2020-10-13 14:50:23 -0400 (Tue, 13 Oct 2020)
URL: https://git.bioconductor.org/packages/simulatorZ
Branch: RELEASE_3_11
Last Commit: feb6805
Last Changed Date: 2020-04-27 14:43:20 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: simulatorZ
Version: 1.22.0
Command: rm -rf simulatorZ.buildbin-libdir && mkdir simulatorZ.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh simulatorZ_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R simulatorZ.buildbin-libdir
StartedAt: 2020-10-14 07:22:51 -0400 (Wed, 14 Oct 2020)
EndedAt: 2020-10-14 07:23:33 -0400 (Wed, 14 Oct 2020)
EllapsedTime: 41.1 seconds
RetCode: 0
Status:  OK 
PackageFile: simulatorZ_1.22.0.tgz
PackageFileSize: 308.8 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf simulatorZ.buildbin-libdir && mkdir simulatorZ.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh simulatorZ_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R simulatorZ.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=simulatorZ.buildbin-libdir simulatorZ_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘simulatorZ’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxformatrices.cpp -o coxformatrices.o
coxformatrices.cpp:79:17: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                NULL
                ^~~~
                {   }
/Library/Developer/CommandLineTools/usr/lib/clang/10.0.1/include/stddef.h:100:18: note: expanded from macro 'NULL'
#    define NULL __null
                 ^~~~~~
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o simulatorZ.so coxformatrices.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/simulatorZ.buildbin-libdir/00LOCK-simulatorZ/00new/simulatorZ/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (simulatorZ)


>>>>>>> 
>>>>>>> FIXING LINKS FOR simulatorZ.buildbin-libdir/simulatorZ/libs/simulatorZ.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "simulatorZ.buildbin-libdir/simulatorZ/libs/simulatorZ.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "simulatorZ.buildbin-libdir/simulatorZ/libs/simulatorZ.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "simulatorZ.buildbin-libdir/simulatorZ/libs/simulatorZ.so"