Alexandre Gouy
| Snapshot Date: 2020-03-11 16:45:12 -0400 (Wed, 11 Mar 2020) |
| URL: https://git.bioconductor.org/packages/signet |
| Branch: master |
| Last Commit: ff71ee4 |
| Last Changed Date: 2019-10-29 13:42:36 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-03-12 14:09:15 -0400 (Thu, 12 Mar 2020).
| Package 1603/1838 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| signet 1.7.0 Alexandre Gouy
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |
| Package: signet |
| Version: 1.7.0 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:signet.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings signet_1.7.0.tar.gz |
| StartedAt: 2020-03-12 09:18:11 -0400 (Thu, 12 Mar 2020) |
| EndedAt: 2020-03-12 09:22:35 -0400 (Thu, 12 Mar 2020) |
| EllapsedTime: 264.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: signet.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:signet.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings signet_1.7.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/signet.Rcheck'
* using R Under development (unstable) (2020-01-27 r77730)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'signet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'signet' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'signet' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' calls which should be '::':
'igraph:::as_graphnel' 'igraph:::graph_from_graphnel'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
nullDist 20.11 0.83 20.94
testSubnet 16.97 0.02 17.66
searchSubnet 7.93 0.00 7.93
writeXGMML 6.01 0.00 7.25
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
testSubnet 19.53 0.00 19.53
nullDist 16.81 0.60 17.41
writeXGMML 12.72 0.01 15.75
searchSubnet 7.38 0.00 7.37
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.11-bioc/meat/signet.Rcheck/00check.log'
for details.
signet.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/signet_1.7.0.tar.gz && rm -rf signet.buildbin-libdir && mkdir signet.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=signet.buildbin-libdir signet_1.7.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL signet_1.7.0.zip && rm signet_1.7.0.tar.gz signet_1.7.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 203k 100 203k 0 0 1639k 0 --:--:-- --:--:-- --:--:-- 1738k
install for i386
* installing *source* package 'signet' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'signet'
finding HTML links ... done
Signet-class html
SignetList-class html
kegg_human html
nullDist html
scores html
searchSubnet html
signet html
testSubnet html
writeXGMML html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'signet' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'signet' as signet_1.7.0.zip
* DONE (signet)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'signet' successfully unpacked and MD5 sums checked
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signet.Rcheck/examples_i386/signet-Ex.timings
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signet.Rcheck/examples_x64/signet-Ex.timings
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