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BUILD BIN report for runibic on celaya2

This page was generated on 2020-01-16 13:49:48 -0500 (Thu, 16 Jan 2020).

Package 1494/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
runibic 1.9.0
Patryk Orzechowski
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/runibic
Branch: master
Last Commit: cee5426
Last Changed Date: 2019-10-29 13:42:34 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: runibic
Version: 1.9.0
Command: rm -rf runibic.buildbin-libdir && mkdir runibic.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh runibic_1.9.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R runibic.buildbin-libdir
StartedAt: 2020-01-16 11:44:20 -0500 (Thu, 16 Jan 2020)
EndedAt: 2020-01-16 11:45:27 -0500 (Thu, 16 Jan 2020)
EllapsedTime: 66.9 seconds
RetCode: 0
Status:  OK 
PackageFile: runibic_1.9.0.tgz
PackageFileSize: 131.8 KiB

Command output

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###
### Running command:
###
###   rm -rf runibic.buildbin-libdir && mkdir runibic.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh runibic_1.9.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R runibic.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=runibic.buildbin-libdir runibic_1.9.0.tar.gz'
>>>>>>> 

* installing *source* package ‘runibic’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c GlobalDefs.cpp -o GlobalDefs.o
GlobalDefs.cpp:117:7: warning: unused variable 'colNum' [-Wunused-variable]
  int colNum = gParameters.ColNumber;
      ^
GlobalDefs.cpp:232:16: warning: unused variable 'rank' [-Wunused-variable]
  int maxvalue,rank;
               ^
In file included from GlobalDefs.cpp:34:
./fibpriv.h:54:13: warning: unused function 'fh_initheap' [-Wunused-function]
static void fh_initheap(struct fibheap *);
            ^
./fibpriv.h:55:13: warning: unused function 'fh_insertrootlist' [-Wunused-function]
static void fh_insertrootlist(struct fibheap *, struct fibheap_el *);
            ^
./fibpriv.h:56:13: warning: unused function 'fh_removerootlist' [-Wunused-function]
static void fh_removerootlist(struct fibheap *, struct fibheap_el *);
            ^
./fibpriv.h:57:13: warning: unused function 'fh_consolidate' [-Wunused-function]
static void fh_consolidate(struct fibheap *);
            ^
./fibpriv.h:58:13: warning: unused function 'fh_heaplink' [-Wunused-function]
static void fh_heaplink(struct fibheap *h, struct fibheap_el *y,
            ^
./fibpriv.h:60:13: warning: unused function 'fh_cut' [-Wunused-function]
static void fh_cut(struct fibheap *, struct fibheap_el *, struct fibheap_el *);
            ^
./fibpriv.h:61:13: warning: unused function 'fh_cascading_cut' [-Wunused-function]
static void fh_cascading_cut(struct fibheap *, struct fibheap_el *);
            ^
./fibpriv.h:62:27: warning: unused function 'fh_extractminel' [-Wunused-function]
static struct fibheap_el *fh_extractminel(struct fibheap *);
                          ^
./fibpriv.h:63:13: warning: unused function 'fh_checkcons' [-Wunused-function]
static void fh_checkcons(struct fibheap *h);
            ^
./fibpriv.h:64:13: warning: unused function 'fh_destroyheap' [-Wunused-function]
static void fh_destroyheap(struct fibheap *h);
            ^
./fibpriv.h:65:12: warning: unused function 'fh_compare' [-Wunused-function]
static int fh_compare(struct fibheap *h, struct fibheap_el *a,
           ^
./fibpriv.h:67:12: warning: unused function 'fh_comparedata' [-Wunused-function]
static int fh_comparedata(struct fibheap *h, int key, void *data,
           ^
./fibpriv.h:69:13: warning: unused function 'fh_insertel' [-Wunused-function]
static void fh_insertel(struct fibheap *h, struct fibheap_el *x);
            ^
./fibpriv.h:70:13: warning: unused function 'fh_deleteel' [-Wunused-function]
static void fh_deleteel(struct fibheap *h, struct fibheap_el *x);
            ^
./fibpriv.h:86:27: warning: unused function 'fhe_newelem' [-Wunused-function]
static struct fibheap_el *fhe_newelem(void);
                          ^
./fibpriv.h:87:13: warning: unused function 'fhe_initelem' [-Wunused-function]
static void fhe_initelem(struct fibheap_el *);
            ^
./fibpriv.h:88:13: warning: unused function 'fhe_insertafter' [-Wunused-function]
static void fhe_insertafter(struct fibheap_el *a, struct fibheap_el *b);
            ^
./fibpriv.h:90:27: warning: unused function 'fhe_remove' [-Wunused-function]
static struct fibheap_el *fhe_remove(struct fibheap_el *a);
                          ^
20 warnings generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c fib.c -o fib.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c runibic.cpp -o runibic.o
runibic.cpp:567:13: warning: unused variable 'temp' [-Wunused-variable]
        int temp;
            ^
1 warning generated.
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o runibic.so GlobalDefs.o RcppExports.o fib.o runibic.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/runibic.buildbin-libdir/00LOCK-runibic/00new/runibic/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (runibic)


>>>>>>> 
>>>>>>> FIXING LINKS FOR runibic.buildbin-libdir/runibic/libs//runibic.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "runibic.buildbin-libdir/runibic/libs//runibic.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "runibic.buildbin-libdir/runibic/libs//runibic.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "runibic.buildbin-libdir/runibic/libs//runibic.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "runibic.buildbin-libdir/runibic/libs//runibic.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "runibic.buildbin-libdir/runibic/libs//runibic.so"