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CHECK report for randRotation on tokay2

This page was generated on 2020-10-17 11:57:33 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE randRotation PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1416/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
randRotation 1.0.0
Peter Hettegger
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/randRotation
Branch: RELEASE_3_11
Last Commit: 606671b
Last Changed Date: 2020-04-27 15:36:01 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: randRotation
Version: 1.0.0
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:randRotation.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings randRotation_1.0.0.tar.gz
StartedAt: 2020-10-17 07:18:40 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 07:20:27 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 106.6 seconds
RetCode: 0
Status:  OK  
CheckDir: randRotation.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:randRotation.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings randRotation_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/randRotation.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'randRotation/DESCRIPTION' ... OK
* this is package 'randRotation' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'randRotation' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
df_estimate  7.2   0.36    7.56
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
df_estimate 6.39   0.26    6.68
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

randRotation.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/randRotation_1.0.0.tar.gz && rm -rf randRotation.buildbin-libdir && mkdir randRotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=randRotation.buildbin-libdir randRotation_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL randRotation_1.0.0.zip && rm randRotation_1.0.0.tar.gz randRotation_1.0.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 38441  100 38441    0     0   614k      0 --:--:-- --:--:-- --:--:--  695k

install for i386

* installing *source* package 'randRotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: randRotation
*** installing help indices
  converting help for package 'randRotation'
    finding HTML links ... done
    X_decomp                                html  
    df_estimate                             html  
    dim                                     html  
    dimnames                                html  
    fdr_p                                   html  
    initBatchRandrot-class                  html  
    initRandrot-class                       html  
    initRandrot                             html  
    initRandrotW                            html  
    pFdr                                    html  
    qqunif                                  html  
    randRotation-package                    html  
    randorth                                html  
    randpermut                              html  
    randrot                                 html  
    rotateStat-class                        html  
    rotateStat                              html  
    show                                    html  
    weights                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'randRotation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'randRotation' as randRotation_1.0.0.zip
* DONE (randRotation)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'randRotation' successfully unpacked and MD5 sums checked

Tests output

randRotation.Rcheck/tests_i386/testthat.Rout


R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(randRotation)
> 
> test_check("randRotation")
== testthat results  ===========================================================
[ OK: 26 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
  10.04    0.79   25.92 

randRotation.Rcheck/tests_x64/testthat.Rout


R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(randRotation)
> 
> test_check("randRotation")
== testthat results  ===========================================================
[ OK: 26 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
  10.56    0.17   25.71 

Example timings

randRotation.Rcheck/examples_i386/randRotation-Ex.timings

nameusersystemelapsed
X_decomp0.010.000.02
df_estimate7.200.367.56
initRandrot0.020.000.01
initRandrotW0.010.020.03
pFdr0.190.000.19
qqunif0.010.000.02
randorth0.070.000.06
randpermut000
randrot0.010.000.01
rotateStat0.130.000.13
weights0.020.000.01

randRotation.Rcheck/examples_x64/randRotation-Ex.timings

nameusersystemelapsed
X_decomp0.010.000.01
df_estimate6.390.266.68
initRandrot0.020.000.01
initRandrotW0.010.010.03
pFdr0.280.000.29
qqunif0.020.000.01
randorth0.110.000.17
randpermut000
randrot0.010.000.02
rotateStat0.220.000.22
weights0.020.000.01