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BUILD BIN report for plyranges on tokay2

This page was generated on 2020-10-17 11:57:25 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE plyranges PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1327/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
plyranges 1.8.0
Stuart Lee
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/plyranges
Branch: RELEASE_3_11
Last Commit: da4f008
Last Changed Date: 2020-04-27 15:15:23 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: plyranges
Version: 1.8.0
Command: rm -rf plyranges.buildbin-libdir && mkdir plyranges.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plyranges.buildbin-libdir plyranges_1.8.0.tar.gz
StartedAt: 2020-10-17 11:17:18 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 11:18:42 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 84.5 seconds
RetCode: 0
Status:  OK  
PackageFile: plyranges_1.8.0.zip
PackageFileSize: 1.521 MiB

Command output

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###
### Running command:
###
###   rm -rf plyranges.buildbin-libdir && mkdir plyranges.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plyranges.buildbin-libdir plyranges_1.8.0.tar.gz
###
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install for i386

* installing *source* package 'plyranges' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'plyranges'
    finding HTML links ... done
    as_ranges                               html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/as_ranges.Rd:33: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/as_ranges.Rd:33: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
    compute_coverage                        html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/compute_coverage.Rd:37: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/compute_coverage.Rd:37: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
    element-setops                          html  
    filter-ranges                           html  
    flank-ranges                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/flank-ranges.Rd:59: file link 'flank' in package 'GenomicRanges' does not exist and so has been treated as a topic
    group_by-ranges                         html  
    io-bam-read                             html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/io-bam-read.Rd:79: file link 'BamFile' in package 'Rsamtools' does not exist and so has been treated as a topic
    io-bed-read                             html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/io-bed-read.Rd:82: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-bed-write                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/io-bed-write.Rd:57: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-bigwig-read                          html  
    io-bigwig-write                         html  
    io-gff-read                             html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/io-gff-read.Rd:53: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-gff-write                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/io-gff-write.Rd:44: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-wig-read                             html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/io-wig-read.Rd:36: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-wig-write                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/io-wig-write.Rd:23: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    mutate-ranges                           html  
    n                                       html  
    n_distinct                              html  
    overlap-joins                           html  
    overscope_ranges                        html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/overscope_ranges.Rd:24: file link 'new_data_mask' in package 'rlang' does not exist and so has been treated as a topic
    plyranges-package                       html  
    ranges-anchor                           html  
    ranges-arrange                          html  
    ranges-bind                             html  
    ranges-chop                             html  
    ranges-class                            html  
    ranges-construct                        html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/ranges-construct.Rd:56: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    ranges-count-overlaps                   html  
    ranges-deferred                         html  
    ranges-disjoin                          html  
    ranges-expand                           html  
    ranges-filter-overlaps                  html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/ranges-filter-overlaps.Rd:60: file link 'subsetByOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
    ranges-follow                           html  
    ranges-info                             html  
    ranges-interweave                       html  
    ranges-names                            html  
    ranges-nearest                          html  
    ranges-overlaps-self                    html  
    ranges-overlaps                         html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/ranges-overlaps.Rd:131: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/ranges-overlaps.Rd:131: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
    ranges-pairs                            html  
    ranges-precede                          html  
    ranges-reduce                           html  
    ranges-select                           html  
    ranges-setops                           html  
    ranges-setters                          html  
    ranges-summarise                        html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/ranges-summarise.Rd:15: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    ranges-tile                             html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/ranges-tile.Rd:52: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/ranges-tile.Rd:52: file link 'tile' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/ranges-tile.Rd:54: file link 'slidingWindows' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/ranges-tile.Rd:54: file link 'slidingWindows' in package 'GenomicRanges' does not exist and so has been treated as a topic
    shift-ranges                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/shift-ranges.Rd:51: file link 'shift' in package 'IRanges' does not exist and so has been treated as a topic
    slice-ranges                            html  
    stretch                                 html  
    tidyverse-reexports                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/tidyverse-reexports.Rd:36: file link 'group_vars' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/tidyverse-reexports.Rd:36: file link 'groups' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/tidyverse-reexports.Rd:36: file link 'summarize' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/tidyverse-reexports.Rd:36: file link 'ungroup' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/tidyverse-reexports.Rd:38: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/tidyverse-reexports.Rd:40: file link '!!' in package 'rlang' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCWjY53/R.INSTALL34803f4d4df5/plyranges/man/tidyverse-reexports.Rd:40: file link '!!!' in package 'rlang' does not exist and so has been treated as a topic
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'plyranges' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plyranges' as plyranges_1.8.0.zip
* DONE (plyranges)