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INSTALL report for pdInfoBuilder on celaya2

This page was generated on 2020-01-16 13:30:36 -0500 (Thu, 16 Jan 2020).

Package 1240/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pdInfoBuilder 1.51.0
Benilton Carvalho
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/pdInfoBuilder
Branch: master
Last Commit: c66602d
Last Changed Date: 2019-10-29 13:34:45 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK 
celaya2 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: pdInfoBuilder
Version: 1.51.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL pdInfoBuilder
StartedAt: 2020-01-15 18:53:31 -0500 (Wed, 15 Jan 2020)
EndedAt: 2020-01-15 18:54:17 -0500 (Wed, 15 Jan 2020)
EllapsedTime: 46.7 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL pdInfoBuilder
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘pdInfoBuilder’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pdInfoBuilder.c -o pdInfoBuilder.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pdInfoBuilder.so pdInfoBuilder.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pdInfoBuilder/00new/pdInfoBuilder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘BuildingPDInfoPkgs.Rnw’ 
   ‘howto-AffymetrixMapping.Rnw’ 
** testing if installed package can be loaded from temporary location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’
** testing if installed package keeps a record of temporary installation path
* DONE (pdInfoBuilder)