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INSTALL report for pathVar on tokay2

This page was generated on 2020-10-17 11:57:21 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE pathVar PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1275/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pathVar 1.18.0
Samuel Zimmerman
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/pathVar
Branch: RELEASE_3_11
Last Commit: 2d4dfad
Last Changed Date: 2020-04-27 14:51:53 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: pathVar
Version: 1.18.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/pathVar_1.18.0.tar.gz && rm -rf pathVar.buildbin-libdir && mkdir pathVar.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathVar.buildbin-libdir pathVar_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL pathVar_1.18.0.zip && rm pathVar_1.18.0.tar.gz pathVar_1.18.0.zip
StartedAt: 2020-10-16 17:34:58 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:36:02 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 64.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/pathVar_1.18.0.tar.gz && rm -rf pathVar.buildbin-libdir && mkdir pathVar.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathVar.buildbin-libdir pathVar_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL pathVar_1.18.0.zip && rm pathVar_1.18.0.tar.gz pathVar_1.18.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  900k  100  900k    0     0  2558k      0 --:--:-- --:--:-- --:--:-- 2610k

install for i386

* installing *source* package 'pathVar' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'pathVar'
    finding HTML links ... done
    bock                                    html  
    diagnosticsVarPlots                     html  
    diagnosticsVarPlotsTwoSample            html  
    geneDistributionSet-class               html  
    geneDistributionSet2-class              html  
    geneDistributionSet3-class              html  
    geneSet-class                           html  
    getGenes                                html  
    makeDBList                              html  
    pathVar-package                         html  
    pathVarOneSample                        html  
    pathVarTwoSamplesCont                   html  
    pathVarTwoSamplesDisc                   html  
    plotAllTwoSampleDistributionCounts      html  
    plotPway                                html  
    pways.kegg                              html  
    pways.reactome                          html  
    saveAsPDF                               html  
    sigPway                                 html  
    significantPathway-class                html  
    significantPathway2-class               html  
    significantPathway3-class               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pathVar' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pathVar' as pathVar_1.18.0.zip
* DONE (pathVar)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'pathVar' successfully unpacked and MD5 sums checked