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INSTALL report for netReg on tokay2

This page was generated on 2020-10-17 11:57:16 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE netReg PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1190/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
netReg 1.12.0
Simon Dirmeier
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/netReg
Branch: RELEASE_3_11
Last Commit: ae63520
Last Changed Date: 2020-04-27 15:06:29 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ TIMEOUT ] ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: netReg
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/netReg_1.12.0.tar.gz && rm -rf netReg.buildbin-libdir && mkdir netReg.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netReg.buildbin-libdir netReg_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL netReg_1.12.0.zip && rm netReg_1.12.0.tar.gz netReg_1.12.0.zip
StartedAt: 2020-10-16 17:05:43 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:45:43 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 2400.3 seconds
RetCode: None
Status:  TIMEOUT  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/netReg_1.12.0.tar.gz && rm -rf netReg.buildbin-libdir && mkdir netReg.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netReg.buildbin-libdir netReg_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL netReg_1.12.0.zip && rm netReg_1.12.0.tar.gz netReg_1.12.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  864k  100  864k    0     0  12.9M      0 --:--:-- --:--:-- --:--:-- 14.5M

install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'netReg/inst/NEWS' to 'netReg/NEWS.md'
* installing *source* package 'netReg' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c graph_utility.cpp -o graph_utility.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c stat_functions.cpp -o stat_functions.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o netReg.dll tmp.def RcppExports.o graph_utility.o stat_functions.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/netReg.buildbin-libdir/00LOCK-netReg/00new/netReg/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'netReg'
    finding HTML links ... done
    cvedgenet-methods                       html  
    edgenet-methods                         html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpagfugH/R.INSTALL1468305f374a/netReg/man/edgenet-methods.Rd:96: file link 'family' in package 'netReg' does not exist and so has been treated as a topic
    family-methods                          html  
    grouplasso-methods                      html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpagfugH/R.INSTALL1468305f374a/netReg/man/grouplasso-methods.Rd:75: file link 'family' in package 'netReg' does not exist and so has been treated as a topic
    netReg-package                          html  
    yeast                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location